Detailed information
Bioinformatically predicted
Overview
| Name | pilN | Type | Machinery gene |
| Locus tag | YA91_RS09760 | Genome accession | NZ_CP023248 |
| Coordinates | 330421..330999 (+) | Length | 192 a.a. |
| NCBI ID | WP_005496569.1 | Uniprot ID | A0AAX0M4K7 |
| Organism | Vibrio parahaemolyticus strain MAVP-26 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 325421..335999
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| YA91_RS09745 (YA91_10350) | oxyR | 325744..326652 (+) | 909 | WP_005465160.1 | DNA-binding transcriptional regulator OxyR | - |
| YA91_RS09750 (YA91_10355) | - | 326708..329278 (-) | 2571 | WP_005496567.1 | PBP1A family penicillin-binding protein | - |
| YA91_RS09755 (YA91_10360) | pilM | 329421..330437 (+) | 1017 | WP_005496568.1 | type IV pilus assembly protein PilM | Machinery gene |
| YA91_RS09760 (YA91_10365) | pilN | 330421..330999 (+) | 579 | WP_005496569.1 | PilN domain-containing protein | Machinery gene |
| YA91_RS09765 (YA91_10370) | pilO | 330992..331585 (+) | 594 | WP_005496571.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| YA91_RS09770 (YA91_10375) | pilP | 331575..332090 (+) | 516 | WP_005454781.1 | pilus assembly protein PilP | Machinery gene |
| YA91_RS09775 (YA91_10380) | pilQ | 332122..333870 (+) | 1749 | WP_005488227.1 | type IV pilus secretin PilQ family protein | Machinery gene |
| YA91_RS09780 (YA91_10385) | aroK | 334059..334577 (+) | 519 | WP_005381319.1 | shikimate kinase AroK | - |
| YA91_RS09785 (YA91_10390) | aroB | 334609..335709 (+) | 1101 | WP_005496576.1 | 3-dehydroquinate synthase | - |
Sequence
Protein
Download Length: 192 a.a. Molecular weight: 22478.98 Da Isoelectric Point: 7.0769
>NTDB_id=245403 YA91_RS09760 WP_005496569.1 330421..330999(+) (pilN) [Vibrio parahaemolyticus strain MAVP-26]
MLYRINLLHWRENQREEHRRRFVGLVVLGVMVALGIQWGVGKYYEYQQDLQQERLDYLTTYISDLDKRIEAMKIAELEHS
KILERLKVVEALQNGRNKTTDFMNLMPAVIPEGVYVDKIKMNDLEIEISGISDSTPRLATMLDNMERSAKLLDVEMHSIV
HGKARFGKEFQTFKVSFMFNTVEEKKEGKQHG
MLYRINLLHWRENQREEHRRRFVGLVVLGVMVALGIQWGVGKYYEYQQDLQQERLDYLTTYISDLDKRIEAMKIAELEHS
KILERLKVVEALQNGRNKTTDFMNLMPAVIPEGVYVDKIKMNDLEIEISGISDSTPRLATMLDNMERSAKLLDVEMHSIV
HGKARFGKEFQTFKVSFMFNTVEEKKEGKQHG
Nucleotide
Download Length: 579 bp
>NTDB_id=245403 YA91_RS09760 WP_005496569.1 330421..330999(+) (pilN) [Vibrio parahaemolyticus strain MAVP-26]
GTGCTGTATCGCATTAACTTATTGCATTGGCGCGAAAATCAAAGGGAAGAGCATCGTCGTCGATTTGTCGGTTTAGTGGT
ATTGGGCGTCATGGTAGCGTTGGGGATTCAGTGGGGCGTTGGCAAATATTATGAGTACCAACAAGATCTTCAACAAGAGC
GACTCGACTATCTAACAACGTACATTTCCGATCTAGATAAGCGGATAGAAGCGATGAAGATCGCGGAGCTTGAACACAGC
AAAATCTTGGAACGCTTGAAAGTTGTGGAAGCGTTGCAAAATGGTCGGAATAAAACCACTGATTTTATGAACCTCATGCC
TGCTGTTATTCCAGAAGGCGTGTATGTCGACAAGATCAAAATGAACGATCTAGAAATTGAAATCTCAGGTATTTCAGACA
GTACACCTCGGCTAGCAACCATGCTCGATAACATGGAGCGTTCTGCCAAGCTACTGGACGTTGAAATGCACTCTATCGTG
CACGGAAAAGCCCGTTTCGGTAAAGAGTTTCAGACCTTTAAAGTGTCCTTCATGTTCAACACGGTAGAAGAGAAGAAAGA
GGGAAAACAACATGGTTAA
GTGCTGTATCGCATTAACTTATTGCATTGGCGCGAAAATCAAAGGGAAGAGCATCGTCGTCGATTTGTCGGTTTAGTGGT
ATTGGGCGTCATGGTAGCGTTGGGGATTCAGTGGGGCGTTGGCAAATATTATGAGTACCAACAAGATCTTCAACAAGAGC
GACTCGACTATCTAACAACGTACATTTCCGATCTAGATAAGCGGATAGAAGCGATGAAGATCGCGGAGCTTGAACACAGC
AAAATCTTGGAACGCTTGAAAGTTGTGGAAGCGTTGCAAAATGGTCGGAATAAAACCACTGATTTTATGAACCTCATGCC
TGCTGTTATTCCAGAAGGCGTGTATGTCGACAAGATCAAAATGAACGATCTAGAAATTGAAATCTCAGGTATTTCAGACA
GTACACCTCGGCTAGCAACCATGCTCGATAACATGGAGCGTTCTGCCAAGCTACTGGACGTTGAAATGCACTCTATCGTG
CACGGAAAAGCCCGTTTCGGTAAAGAGTTTCAGACCTTTAAAGTGTCCTTCATGTTCAACACGGTAGAAGAGAAGAAAGA
GGGAAAACAACATGGTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilN | Vibrio campbellii strain DS40M4 |
83.333 |
100 |
0.833 |
| pilN | Vibrio cholerae strain A1552 |
62.431 |
94.271 |
0.589 |