Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   VF_RS00620 Genome accession   NC_006840
Coordinates   144577..145251 (+) Length   224 a.a.
NCBI ID   WP_011260988.1    Uniprot ID   Q5E8M5
Organism   Aliivibrio fischeri ES114     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 139577..150251
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VF_RS00600 (VF0121) greB 140927..141400 (-) 474 WP_011260985.1 transcription elongation factor GreB -
  VF_RS00605 (VF0122) - 141419..142357 (-) 939 WP_011260986.1 Kdo(2)-lipid IV(A) acyltransferase -
  VF_RS00610 (VF0123) slmA 142382..142972 (-) 591 WP_005417043.1 nucleoid occlusion factor SlmA -
  VF_RS00615 (VF0125) coaBC 143127..144356 (-) 1230 WP_011260987.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  VF_RS00620 (VF0126) radC 144577..145251 (+) 675 WP_011260988.1 RadC family protein Machinery gene
  VF_RS00625 (VF0127) rpmB 145447..145683 (+) 237 WP_005417050.1 50S ribosomal protein L28 -
  VF_RS00630 (VF0128) rpmG 145698..145865 (+) 168 WP_005417052.1 50S ribosomal protein L33 -
  VF_RS00635 (VF0129) - 146326..146781 (+) 456 WP_011260989.1 hypothetical protein -
  VF_RS00640 (VF0130) mutM 147021..147839 (+) 819 WP_011260990.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  VF_RS00645 (VF0131) - 147864..149843 (+) 1980 WP_011260991.1 LTA synthase family protein -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 25420.21 Da        Isoelectric Point: 6.3934

>NTDB_id=24533 VF_RS00620 WP_011260988.1 144577..145251(+) (radC) [Aliivibrio fischeri ES114]
MSLMNLPEESRPREKLLALGPKSLTDAELLAIFLRTGTQGMNAIELADKLLKEFGSLRKLLSSDENEFCSHKGLGTAKFA
QLQAVVEMTERYLFEKIEKEDALTSPEHTKRYLTRMLRDRHREAFYVLFLDNQHRVLKGEILFEGTIDVAAVYPREVVKR
SIDYNAAAIILAHNHPSGVAEPSQADRRITKRISDAVELVDIRVLDHFVIGDGEIVSFAERGWI

Nucleotide


Download         Length: 675 bp        

>NTDB_id=24533 VF_RS00620 WP_011260988.1 144577..145251(+) (radC) [Aliivibrio fischeri ES114]
ATGTCATTAATGAACCTACCAGAAGAATCTAGACCAAGAGAGAAGTTACTCGCACTTGGGCCAAAGTCATTAACGGATGC
TGAATTACTCGCGATCTTTTTAAGAACTGGGACCCAAGGAATGAATGCCATTGAACTGGCAGACAAACTATTAAAGGAGT
TCGGCTCATTAAGGAAGTTACTCAGTTCTGATGAAAATGAATTCTGCAGTCATAAAGGGTTGGGAACCGCAAAGTTTGCA
CAGCTGCAAGCCGTTGTTGAAATGACAGAACGGTATTTATTTGAAAAGATTGAAAAAGAGGATGCGTTAACCAGTCCCGA
GCATACAAAGCGTTATTTAACCCGAATGTTAAGAGATAGACATAGGGAAGCGTTTTATGTTTTGTTCCTTGATAATCAGC
ATCGAGTACTAAAAGGGGAGATATTATTTGAAGGAACAATCGATGTTGCTGCCGTTTATCCGAGAGAAGTTGTAAAAAGA
TCGATAGATTATAATGCAGCCGCCATCATTTTAGCGCATAATCACCCCTCCGGTGTAGCCGAACCAAGTCAAGCCGACAG
AAGAATTACAAAACGTATTTCTGATGCCGTAGAATTGGTGGATATCCGAGTCCTTGATCATTTTGTGATCGGTGATGGAG
AAATAGTCTCTTTTGCCGAAAGAGGATGGATTTGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(104-222)

UPF0758 N-terminal (UPF0758_N)

(5-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5E8M5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.378

96.875

0.527
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

36.161

100

0.362

Multiple sequence alignment