Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   CLI14_RS09210 Genome accession   NZ_CP023208
Coordinates   1995901..1997307 (-) Length   468 a.a.
NCBI ID   WP_026028983.1    Uniprot ID   -
Organism   Vibrio anguillarum strain ATCC-68554     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1990901..2002307
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CLI14_RS09175 (CLI14_09175) moaE 1991569..1992039 (-) 471 WP_038148363.1 molybdopterin synthase catalytic subunit MoaE -
  CLI14_RS09180 (CLI14_09180) moaD 1992042..1992287 (-) 246 WP_010320680.1 molybdopterin synthase sulfur carrier subunit -
  CLI14_RS09185 (CLI14_09185) moaC 1992280..1992780 (-) 501 WP_010320681.1 cyclic pyranopterin monophosphate synthase MoaC -
  CLI14_RS09190 (CLI14_09190) moaB 1992791..1993303 (-) 513 WP_010320682.1 molybdenum cofactor biosynthesis protein B -
  CLI14_RS09195 (CLI14_09195) moaA 1993370..1994359 (-) 990 WP_026028246.1 GTP 3',8-cyclase MoaA -
  CLI14_RS09200 (CLI14_09200) - 1994671..1995561 (+) 891 WP_013857260.1 YvcK family protein -
  CLI14_RS09205 (CLI14_09205) luxU 1995558..1995896 (-) 339 WP_013857261.1 quorum-sensing phosphorelay protein LuxU -
  CLI14_RS09210 (CLI14_09210) luxO 1995901..1997307 (-) 1407 WP_026028983.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  CLI14_RS09215 (CLI14_09215) uvrB 1997549..1999579 (-) 2031 WP_041769234.1 excinuclease ABC subunit UvrB -

Sequence

Protein


Download         Length: 468 a.a.        Molecular weight: 52158.56 Da        Isoelectric Point: 6.0312

>NTDB_id=245317 CLI14_RS09210 WP_026028983.1 1995901..1997307(-) (luxO) [Vibrio anguillarum strain ATCC-68554]
MQPDFSLQKAKYLLMVEDTASVAALYRSYLTPLEIDINIVGTGRDAIESLAHREPDLILLDLRLPDMTGMDVLHAVKSHY
PNVPVIFMTAHGSIDTAVEAMRHGAQDFLIKPCEADRLRVTVNNAIRKASKLKNEAGNPGNQNYQGFIGSSQTMQSVYRT
IDSAASSKASIFITGESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATDRQGAAELADG
GTLFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRE
RGDDVIEIAYSLLGFMSKEEGKGFVRLAPEVVERFTRYEWPGNVRQLQNVLRNVVVLNHGNEIELSMLPPPLNQVVDNKI
RLANLTTETRKENITVHDIFPLWMTEKQAIEQAIEACDGNIPKAASYLDVSPSTIYRKLQAWNSRENS

Nucleotide


Download         Length: 1407 bp        

>NTDB_id=245317 CLI14_RS09210 WP_026028983.1 1995901..1997307(-) (luxO) [Vibrio anguillarum strain ATCC-68554]
ATGCAACCTGACTTTTCTCTACAAAAGGCTAAATATCTTTTGATGGTGGAAGATACGGCTTCCGTTGCGGCGCTGTATCG
TTCATACCTCACCCCCCTTGAAATCGATATCAATATTGTTGGTACAGGTCGTGATGCGATAGAGAGTTTAGCTCACCGAG
AGCCGGACCTCATATTGCTGGATCTTCGATTACCCGATATGACGGGCATGGACGTTTTACATGCTGTGAAAAGTCACTAC
CCCAATGTGCCAGTGATATTCATGACCGCTCATGGTTCGATTGATACCGCAGTGGAAGCGATGCGTCACGGTGCCCAAGA
TTTCTTGATCAAACCTTGTGAAGCAGACCGCTTGCGCGTCACGGTTAACAACGCCATACGTAAAGCTAGCAAACTAAAAA
ATGAGGCTGGTAACCCGGGTAATCAGAACTACCAAGGTTTTATCGGCAGCAGTCAAACCATGCAATCAGTCTATCGAACC
ATTGACTCAGCGGCCTCCAGTAAAGCTAGTATTTTTATTACTGGCGAAAGTGGTACGGGTAAAGAGGTGTGCGCAGAAGC
GATTCATGCGGCCAGTAAACGTGGCGATAAACCCTTCATTGCGATTAACTGCGCCGCCATTCCTAAAGACTTAATAGAGA
GTGAACTCTTTGGCCACGTGAAAGGCGCATTTACTGGCGCAGCGACCGATCGCCAAGGCGCAGCCGAGTTGGCTGATGGC
GGCACACTGTTTTTGGATGAACTGTGTGAAATGGATTTGGATTTGCAGACCAAGCTGTTGCGCTTTATCCAAACGGGCAC
ATTCCAGAAAGTGGGCTCATCGAAGATGAAAAGTGTCGATGTTCGTTTTGTCTGCGCTACCAACCGCGATCCATGGAAAG
AGGTACAAGAGGGTCGTTTTCGTGAAGATTTGTACTATCGTCTTTATGTGATCCCATTGCATTTACCACCGCTACGCGAG
CGAGGCGATGACGTTATTGAAATTGCTTACTCTTTGCTCGGCTTTATGTCTAAAGAAGAAGGCAAAGGTTTTGTCCGCTT
AGCGCCAGAGGTTGTGGAGCGTTTTACGCGCTATGAATGGCCGGGTAATGTGCGTCAACTGCAAAACGTGTTGCGGAATG
TGGTGGTATTGAACCACGGCAACGAGATCGAACTGAGCATGTTACCGCCACCGCTAAATCAAGTCGTGGATAACAAGATC
CGATTAGCAAACCTAACGACGGAAACGCGCAAGGAAAATATAACCGTGCACGATATTTTTCCTTTATGGATGACGGAAAA
GCAAGCCATCGAACAAGCGATAGAAGCGTGTGATGGTAATATTCCTAAAGCAGCCAGTTATTTAGACGTTAGCCCTTCAA
CGATCTACCGCAAGCTTCAAGCGTGGAACAGTAGAGAGAACTCATAG

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(148-313)

Bacterial regulatory protein, Fis family (HTH_8)

(422-462)

Response regulator receiver domain (Response_reg)

(14-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

88.641

95.94

0.85
  pilR Pseudomonas aeruginosa PAK

38.178

98.504

0.376

Multiple sequence alignment