Detailed information
Bioinformatically predicted
Overview
| Name | pilN | Type | Machinery gene |
| Locus tag | CLI14_RS01665 | Genome accession | NZ_CP023208 |
| Coordinates | 361542..362144 (+) | Length | 200 a.a. |
| NCBI ID | WP_013855886.1 | Uniprot ID | A0AAW4AFV0 |
| Organism | Vibrio anguillarum strain ATCC-68554 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 356542..367144
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CLI14_RS01650 (CLI14_01650) | oxyR | 356967..357857 (+) | 891 | WP_026027425.1 | DNA-binding transcriptional regulator OxyR | - |
| CLI14_RS01655 (CLI14_01655) | - | 357894..360392 (-) | 2499 | WP_013855884.1 | PBP1A family penicillin-binding protein | - |
| CLI14_RS01660 (CLI14_01660) | pilM | 360542..361552 (+) | 1011 | WP_013855885.1 | type IV pilus assembly protein PilM | Machinery gene |
| CLI14_RS01665 (CLI14_01665) | pilN | 361542..362144 (+) | 603 | WP_013855886.1 | PilN domain-containing protein | Machinery gene |
| CLI14_RS01670 (CLI14_01670) | pilO | 362137..362730 (+) | 594 | WP_013855887.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| CLI14_RS01675 (CLI14_01675) | pilP | 362717..363238 (+) | 522 | WP_013855888.1 | pilus assembly protein PilP | Machinery gene |
| CLI14_RS01680 (CLI14_01680) | pilQ | 363262..364977 (+) | 1716 | WP_013855889.1 | type IV pilus secretin PilQ family protein | Machinery gene |
| CLI14_RS01685 (CLI14_01685) | aroK | 365164..365685 (+) | 522 | WP_010317691.1 | shikimate kinase AroK | - |
| CLI14_RS01690 (CLI14_01690) | aroB | 365710..366798 (+) | 1089 | WP_026027894.1 | 3-dehydroquinate synthase | - |
Sequence
Protein
Download Length: 200 a.a. Molecular weight: 22702.27 Da Isoelectric Point: 9.6928
>NTDB_id=245302 CLI14_RS01665 WP_013855886.1 361542..362144(+) (pilN) [Vibrio anguillarum strain ATCC-68554]
MLHSINLLPWREEQRAAHKRRFMGLVVLGVMSAVGIQWGIGLYFSGQAQLQESRLAYLNQYIQQLDKQINALKMTEQEHK
ALLTRLSVVESLQSQRNKTTELMNLMPQLMPEGVYVDKIKMNGEEIEITGISDSTARLATMLDNFEKSALLSDVNMHSIV
HGNKRFGKEFQTFKVSFMFHSPTPQGSVLTKIRPTGAVHD
MLHSINLLPWREEQRAAHKRRFMGLVVLGVMSAVGIQWGIGLYFSGQAQLQESRLAYLNQYIQQLDKQINALKMTEQEHK
ALLTRLSVVESLQSQRNKTTELMNLMPQLMPEGVYVDKIKMNGEEIEITGISDSTARLATMLDNFEKSALLSDVNMHSIV
HGNKRFGKEFQTFKVSFMFHSPTPQGSVLTKIRPTGAVHD
Nucleotide
Download Length: 603 bp
>NTDB_id=245302 CLI14_RS01665 WP_013855886.1 361542..362144(+) (pilN) [Vibrio anguillarum strain ATCC-68554]
ATGTTGCATAGCATTAACTTACTGCCTTGGCGAGAGGAACAAAGAGCGGCGCATAAGCGTCGTTTTATGGGCTTGGTCGT
CTTAGGTGTGATGAGCGCTGTTGGTATTCAATGGGGTATCGGTTTGTATTTCTCTGGGCAAGCACAGCTGCAAGAGTCTC
GTCTGGCCTATTTGAATCAATACATTCAGCAGCTTGATAAACAGATCAATGCATTAAAAATGACGGAACAAGAACACAAG
GCACTATTAACTCGCTTATCGGTTGTTGAGTCATTGCAAAGCCAACGCAATAAAACCACCGAGTTGATGAACCTGATGCC
ACAGCTTATGCCTGAAGGAGTCTACGTCGATAAGATCAAAATGAATGGTGAAGAAATTGAAATTACGGGCATCAGTGACA
GCACTGCGCGTCTTGCGACCATGCTCGATAATTTTGAAAAATCAGCCTTACTTTCCGATGTCAACATGCACTCTATCGTG
CACGGTAATAAGCGATTTGGTAAGGAGTTTCAGACGTTTAAAGTGTCATTTATGTTTCATTCCCCGACACCACAGGGCTC
TGTGCTAACCAAGATTCGGCCTACAGGAGCTGTCCATGACTAG
ATGTTGCATAGCATTAACTTACTGCCTTGGCGAGAGGAACAAAGAGCGGCGCATAAGCGTCGTTTTATGGGCTTGGTCGT
CTTAGGTGTGATGAGCGCTGTTGGTATTCAATGGGGTATCGGTTTGTATTTCTCTGGGCAAGCACAGCTGCAAGAGTCTC
GTCTGGCCTATTTGAATCAATACATTCAGCAGCTTGATAAACAGATCAATGCATTAAAAATGACGGAACAAGAACACAAG
GCACTATTAACTCGCTTATCGGTTGTTGAGTCATTGCAAAGCCAACGCAATAAAACCACCGAGTTGATGAACCTGATGCC
ACAGCTTATGCCTGAAGGAGTCTACGTCGATAAGATCAAAATGAATGGTGAAGAAATTGAAATTACGGGCATCAGTGACA
GCACTGCGCGTCTTGCGACCATGCTCGATAATTTTGAAAAATCAGCCTTACTTTCCGATGTCAACATGCACTCTATCGTG
CACGGTAATAAGCGATTTGGTAAGGAGTTTCAGACGTTTAAAGTGTCATTTATGTTTCATTCCCCGACACCACAGGGCTC
TGTGCTAACCAAGATTCGGCCTACAGGAGCTGTCCATGACTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilN | Vibrio cholerae strain A1552 |
67.553 |
94 |
0.635 |
| pilN | Vibrio campbellii strain DS40M4 |
65.591 |
93 |
0.61 |