Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   DBA17_RS26005 Genome accession   NZ_CP028719
Coordinates   5816954..5817607 (-) Length   217 a.a.
NCBI ID   WP_128791758.1    Uniprot ID   -
Organism   Streptomyces sp. endophyte_N2     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 5811954..5822607
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DBA17_RS25995 - 5813308..5815086 (-) 1779 WP_128791756.1 ABC transporter ATP-binding protein -
  DBA17_RS26000 - 5815083..5816804 (-) 1722 WP_128791757.1 ABC transporter ATP-binding protein -
  DBA17_RS26005 vraR 5816954..5817607 (-) 654 WP_128791758.1 response regulator transcription factor Regulator
  DBA17_RS26010 - 5817597..5818847 (-) 1251 WP_128791759.1 sensor histidine kinase -
  DBA17_RS26015 - 5818905..5819639 (-) 735 WP_128791760.1 ABC transporter permease -
  DBA17_RS26020 - 5819636..5820544 (-) 909 WP_164932597.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 22940.22 Da        Isoelectric Point: 6.7396

>NTDB_id=245277 DBA17_RS26005 WP_128791758.1 5816954..5817607(-) (vraR) [Streptomyces sp. endophyte_N2]
MTTEPLITLLIVDDHPVVRDGLRGMFESASGSAPGFRVLGEAASGPEAVARAAELDPDVILMDLRMPGGSGVAAIRELTR
RGARAKVLVLTTYDTDSDTLPAIEAGATGYLLKDAPRDELFTAVRAAAEGRTVLSPAVASRLVRAVRTPAPGNEPLSTRE
REVLTLVARGTSNREIARELFISEATVKTHLTHLYTKLGAKDRAAAVAAAYDRGILG

Nucleotide


Download         Length: 654 bp        

>NTDB_id=245277 DBA17_RS26005 WP_128791758.1 5816954..5817607(-) (vraR) [Streptomyces sp. endophyte_N2]
ATGACCACTGAACCCCTCATCACGCTGCTGATCGTCGACGACCACCCGGTCGTCCGGGACGGTCTGCGCGGCATGTTCGA
GTCCGCGTCCGGCTCCGCGCCCGGCTTCCGGGTGCTCGGCGAGGCCGCGAGCGGTCCCGAGGCGGTCGCGCGGGCGGCCG
AGCTGGACCCCGACGTGATCCTGATGGACCTGCGCATGCCGGGCGGCTCCGGGGTCGCCGCCATCCGCGAGCTGACCCGC
CGCGGCGCCCGCGCCAAGGTCCTGGTCCTGACCACGTACGACACGGACTCCGACACCCTGCCCGCGATCGAGGCGGGCGC
CACCGGCTACCTCCTCAAGGACGCCCCGCGCGACGAGCTGTTCACCGCCGTCCGCGCCGCCGCCGAGGGCCGTACCGTCC
TCTCCCCCGCCGTCGCCTCCCGCCTCGTGCGGGCCGTGCGCACCCCCGCTCCCGGCAACGAGCCCCTCTCCACCCGCGAA
CGCGAGGTCCTCACCCTGGTCGCCAGGGGCACCTCCAACCGCGAGATCGCCCGCGAACTCTTCATCAGCGAGGCCACGGT
CAAGACCCACCTCACCCACCTCTACACCAAGTTGGGCGCCAAGGACCGCGCGGCCGCGGTGGCGGCGGCGTACGACCGGG
GGATCCTGGGCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(155-209)

Response regulator receiver domain (Response_reg)

(10-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

38.095

96.774

0.369
  degU Bacillus subtilis subsp. subtilis str. 168

35.111

100

0.364

Multiple sequence alignment