Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   DBA17_RS21165 Genome accession   NZ_CP028719
Coordinates   4798719..4800128 (-) Length   469 a.a.
NCBI ID   WP_128791111.1    Uniprot ID   A0A7W3RN86
Organism   Streptomyces sp. endophyte_N2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4793719..4805128
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DBA17_RS21140 - 4794088..4794753 (-) 666 WP_202930349.1 hypothetical protein -
  DBA17_RS21145 - 4794741..4795280 (-) 540 WP_037660309.1 SigE family RNA polymerase sigma factor -
  DBA17_RS21150 - 4795562..4796437 (-) 876 WP_085565927.1 A/G-specific adenine glycosylase -
  DBA17_RS21155 - 4796617..4797465 (+) 849 WP_206660458.1 hypothetical protein -
  DBA17_RS21160 disA 4797514..4798638 (-) 1125 WP_037660305.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  DBA17_RS21165 radA/sms 4798719..4800128 (-) 1410 WP_128791111.1 DNA repair protein RadA Machinery gene
  DBA17_RS21175 - 4800489..4802141 (+) 1653 WP_128791113.1 sigma-70 family RNA polymerase sigma factor -
  DBA17_RS21180 - 4803149..4803988 (-) 840 WP_128791114.1 hypothetical protein -
  DBA17_RS21185 - 4804060..4804992 (+) 933 WP_128791115.1 Ppx/GppA phosphatase family protein -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 49815.02 Da        Isoelectric Point: 8.0106

>NTDB_id=245265 DBA17_RS21165 WP_128791111.1 4798719..4800128(-) (radA/sms) [Streptomyces sp. endophyte_N2]
MAARTKTTKDRPSYRCTECGWQTAKWLGRCPECQAWGTVEEYGAPAVRTTAPGRVVTSALPIGQVDGRQATARTTGVPEL
DRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAASEEHRTLYVTGEESASQVRLRADRINALHDQLYLAAETDLSAVL
GHLDEVKPSLLILDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLHF
EGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRDAPVPGTCLTVTLEGRRPLVAEVQALTVDSQI
PSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLSEPAADLAIALALASAASDTPLPKNLVAIGEVGL
AGEVRRVTGVQRRLAEAHRLGFTHALVPGDPGKTPPGMKVLEVADMGDALRVLPRSRRREAPREPEERR

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=245265 DBA17_RS21165 WP_128791111.1 4798719..4800128(-) (radA/sms) [Streptomyces sp. endophyte_N2]
ATGGCTGCCCGTACCAAGACCACCAAGGACCGTCCGTCCTACCGCTGCACCGAGTGCGGCTGGCAGACGGCCAAGTGGCT
CGGCCGCTGCCCCGAGTGCCAGGCGTGGGGCACCGTCGAGGAGTACGGCGCGCCCGCGGTCCGCACCACGGCGCCCGGCC
GGGTCGTCACCTCCGCGCTGCCCATCGGCCAGGTCGACGGCAGGCAGGCCACCGCCCGCACCACCGGGGTGCCCGAGCTG
GACCGGGTGCTCGGCGGCGGGCTCGTACCGGGCGCGGTGGTGCTGCTGGCGGGCGAGCCGGGCGTCGGCAAGTCCACCCT
GCTGCTGGACGTGGCGGCCAAGGCGGCGAGCGAGGAGCACCGCACCCTCTATGTCACCGGCGAGGAGTCGGCGAGCCAGG
TGCGGCTGCGCGCCGACCGCATCAACGCGCTGCACGACCAGCTGTATCTGGCCGCCGAGACCGACCTCTCCGCCGTCCTC
GGACACCTGGACGAGGTCAAGCCCTCCCTGCTGATCCTGGACTCGGTGCAGACGGTCGCCTCCCCGGAGATCGACGGCGC
GCCCGGCGGCATGGCCCAGGTCCGGGAGGTGGCCGGGGCGCTGATCCGGGCCTCCAAGGAGCGCGGCATGTCCACGCTGC
TGGTCGGCCATGTCACCAAGGACGGCGCGATCGCGGGCCCGCGACTGCTGGAGCACCTGGTGGACGTGGTGCTGCACTTC
GAGGGCGACCGGCACGCCCGGCTCCGCCTGGTCCGCGGCGTGAAGAACCGGTACGGCGCGACGGACGAGGTCGGCTGCTT
CGAGCTGCACGACGAGGGGATCACCGGCCTCGCCGACCCCAGCGGCCTCTTCCTGACCCGGCGCGACGCACCGGTGCCGG
GCACCTGTCTGACCGTGACCCTGGAGGGCCGCCGCCCGCTGGTGGCCGAGGTGCAGGCGCTGACCGTGGACTCCCAGATC
CCCTCCCCCCGGCGCACCACGTCGGGTCTGGAGACCTCCCGGGTGTCGATGATGCTGGCCGTGCTCGAACAGCGCGGCCG
GATCAGCGCGCTCGGCAAGCGGGACATCTACTCGGCCACGGTCGGCGGTGTGAAGCTGTCCGAGCCCGCCGCCGATCTGG
CCATCGCCCTCGCGCTGGCCTCCGCCGCGAGCGACACCCCGCTGCCGAAGAACCTGGTGGCCATCGGCGAGGTGGGTCTC
GCCGGCGAGGTGAGACGGGTCACGGGCGTGCAGCGCAGGCTCGCCGAGGCGCACCGGCTCGGCTTCACACATGCGCTGGT
CCCGGGCGATCCGGGGAAGACCCCGCCGGGGATGAAGGTGCTGGAAGTCGCGGACATGGGGGATGCGCTGCGGGTCCTGC
CCCGCTCCCGTCGCCGAGAGGCCCCACGGGAGCCGGAGGAGCGCCGGTAG

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(78-222)

Subunit ChlI of Mg-chelatase (ChlI)

(369-428)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7W3RN86

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

44.027

96.375

0.424
  radA Streptococcus mitis NCTC 12261

42.762

95.736

0.409
  radA Streptococcus mitis SK321

42.762

95.736

0.409
  radA Streptococcus pneumoniae Rx1

42.539

95.736

0.407
  radA Streptococcus pneumoniae D39

42.539

95.736

0.407
  radA Streptococcus pneumoniae R6

42.539

95.736

0.407
  radA Streptococcus pneumoniae TIGR4

42.539

95.736

0.407