Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   DBA17_RS20505 Genome accession   NZ_CP028719
Coordinates   4647258..4647857 (+) Length   199 a.a.
NCBI ID   WP_128791032.1    Uniprot ID   A0A7W3RMF3
Organism   Streptomyces sp. endophyte_N2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4642258..4652857
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DBA17_RS20490 - 4644236..4645797 (+) 1562 Protein_4006 substrate-binding domain-containing protein -
  DBA17_RS20495 - 4645879..4646625 (-) 747 WP_085565815.1 SLATT domain-containing protein -
  DBA17_RS20500 - 4646862..4647206 (+) 345 WP_128791031.1 YbaB/EbfC family nucleoid-associated protein -
  DBA17_RS20505 recR 4647258..4647857 (+) 600 WP_128791032.1 recombination mediator RecR Machinery gene
  DBA17_RS20510 - 4647850..4648512 (+) 663 WP_128791033.1 DUF5063 domain-containing protein -
  DBA17_RS20515 - 4648717..4649988 (+) 1272 WP_085565818.1 aspartate kinase -
  DBA17_RS20520 - 4649985..4651040 (+) 1056 WP_128791034.1 aspartate-semialdehyde dehydrogenase -
  DBA17_RS20525 - 4651444..4652031 (+) 588 WP_233534533.1 SigE family RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21788.19 Da        Isoelectric Point: 4.9909

>NTDB_id=245260 DBA17_RS20505 WP_128791032.1 4647258..4647857(+) (recR) [Streptomyces sp. endophyte_N2]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHILQAEPTDVKRLAQALLEVKAKVRFCAMCGNVAQEELCNICRDPRRDPSV
IAVVEEPKDVVAIERTREFRGRYHVLGGAISPIEGVGPDDLRIRELLTRLADGTVTELILATDPNLEGEATATYLARMIK
PMGLKVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=245260 DBA17_RS20505 WP_128791032.1 4647258..4647857(+) (recR) [Streptomyces sp. endophyte_N2]
TTGTACGAAGGCGTGGTCCAGGACCTCATCGACGAGCTGGGGCGGCTGCCCGGCGTCGGTCCCAAGAGCGCGCAGCGGAT
CGCCTTTCACATCCTCCAGGCCGAGCCGACGGACGTGAAGCGGCTCGCGCAGGCGCTCCTGGAGGTCAAGGCGAAGGTCC
GCTTCTGCGCGATGTGCGGCAATGTCGCGCAGGAGGAACTGTGCAACATCTGCCGTGACCCGCGCCGCGACCCCTCGGTG
ATCGCGGTCGTGGAGGAGCCGAAGGACGTCGTCGCGATCGAGCGCACCCGCGAGTTCCGCGGCCGCTATCACGTGCTCGG
CGGGGCGATCAGCCCCATCGAGGGTGTCGGCCCCGACGACCTGCGTATACGGGAACTTCTCACGCGGTTGGCCGACGGGA
CGGTCACGGAGCTGATCCTGGCCACCGATCCGAATCTGGAGGGCGAGGCGACGGCCACGTACCTCGCGCGCATGATCAAG
CCCATGGGCCTGAAGGTCACCCGCCTGGCCAGCGGCCTCCCGGTGGGTGGCGACCTGGAATACGCGGACGAGGTCACCCT
CGGCCGCGCCTTCGAGGGGAGAAGACTCCTAGATGTCTGA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(79-170)

Helix-hairpin-helix motif (HHH)

(2-27)

RecR protein (RecR_ZnF)

(38-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7W3RMF3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

55.102

98.492

0.543
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

54.124

97.487

0.528
  recR Streptococcus pneumoniae R6

47.938

97.487

0.467