Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   DBA17_RS20410 Genome accession   NZ_CP028719
Coordinates   4625186..4625866 (+) Length   226 a.a.
NCBI ID   WP_128791019.1    Uniprot ID   -
Organism   Streptomyces sp. endophyte_N2     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 4620186..4630866
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DBA17_RS20385 - 4620282..4620806 (-) 525 WP_128791015.1 DUF6879 family protein -
  DBA17_RS20390 - 4620790..4620996 (-) 207 WP_128791016.1 hypothetical protein -
  DBA17_RS20395 - 4621297..4622256 (+) 960 WP_128791017.1 alpha/beta hydrolase -
  DBA17_RS20400 - 4622276..4623649 (+) 1374 WP_241662139.1 acyltransferase -
  DBA17_RS20405 - 4623693..4625189 (+) 1497 WP_241662140.1 sensor histidine kinase -
  DBA17_RS20410 vraR 4625186..4625866 (+) 681 WP_128791019.1 response regulator transcription factor Regulator
  DBA17_RS20415 - 4625961..4627319 (+) 1359 WP_241661942.1 histidine kinase -
  DBA17_RS20420 - 4627316..4627981 (+) 666 WP_037658423.1 response regulator transcription factor -
  DBA17_RS20425 - 4628027..4629247 (+) 1221 WP_128791021.1 cytochrome P450 -
  DBA17_RS20430 - 4629289..4629780 (+) 492 WP_327393840.1 Uma2 family endonuclease -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 24136.77 Da        Isoelectric Point: 6.5004

>NTDB_id=245258 DBA17_RS20410 WP_128791019.1 4625186..4625866(+) (vraR) [Streptomyces sp. endophyte_N2]
MTSGAGPIRVLIADDQEMVRQGFTVLLNAQPGIEVVGQAVDGREAITRSAELSPDVVLMDIRMPELGGIQATEHIAVTQP
AVKVLVLTTFDLDEYVYDALRAGASGFLLKDASADKLAEAVRVVAGGDALLAPGVTRRLIAEFSRLHGGRRSPGHRRIGD
LTERETEVLALIAQGLSNAEIAGRLVVAEQTVKTHVGRILVKLGLRDRTQAAIFAYESGLIRPGTR

Nucleotide


Download         Length: 681 bp        

>NTDB_id=245258 DBA17_RS20410 WP_128791019.1 4625186..4625866(+) (vraR) [Streptomyces sp. endophyte_N2]
ATGACGAGCGGCGCCGGCCCGATCCGCGTACTCATCGCCGACGACCAGGAGATGGTCCGGCAGGGCTTCACCGTGCTGCT
CAACGCCCAGCCCGGCATCGAGGTCGTCGGCCAGGCGGTGGACGGCCGCGAGGCGATCACGAGGTCCGCCGAACTGTCCC
CGGACGTCGTCCTGATGGACATCCGCATGCCCGAACTGGGCGGCATCCAGGCCACGGAGCACATCGCCGTCACCCAACCC
GCCGTCAAGGTCCTGGTACTGACCACCTTCGACCTGGACGAGTACGTGTACGACGCGTTGCGCGCCGGCGCCTCCGGGTT
CCTGCTCAAGGACGCCTCCGCCGACAAACTCGCCGAGGCGGTACGGGTGGTGGCCGGCGGTGACGCCCTGCTCGCCCCCG
GTGTCACCCGGCGCCTCATCGCCGAGTTCTCCCGGCTGCACGGCGGCCGCCGCTCCCCGGGGCACCGGCGCATCGGGGAC
CTCACCGAACGGGAGACGGAGGTACTGGCGCTGATCGCGCAGGGGCTGAGCAACGCGGAGATAGCAGGCCGGCTGGTGGT
GGCCGAGCAGACGGTGAAGACCCATGTGGGCCGGATCCTGGTGAAGCTGGGGCTGCGGGACCGCACCCAGGCCGCGATCT
TCGCGTACGAGTCGGGGCTGATCCGGCCGGGGACGCGGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(10-122)

Bacterial regulatory proteins, luxR family (GerE)

(161-215)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

44.186

95.133

0.42
  degU Bacillus subtilis subsp. subtilis str. 168

41.704

98.673

0.412

Multiple sequence alignment