Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   DBA17_RS12740 Genome accession   NZ_CP028719
Coordinates   2970714..2971829 (-) Length   371 a.a.
NCBI ID   WP_128789938.1    Uniprot ID   -
Organism   Streptomyces sp. endophyte_N2     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 2965714..2976829
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DBA17_RS12730 rcrP 2966989..2968722 (+) 1734 WP_128789936.1 ABC transporter ATP-binding protein Regulator
  DBA17_RS12735 rcrQ 2968722..2970650 (+) 1929 WP_128789937.1 ABC transporter ATP-binding protein Regulator
  DBA17_RS12740 rpoS 2970714..2971829 (-) 1116 WP_128789938.1 RNA polymerase sigma factor Regulator
  DBA17_RS12745 dnaG 2971944..2973851 (-) 1908 WP_128789939.1 DNA primase -
  DBA17_RS12750 - 2973898..2975163 (-) 1266 WP_128789940.1 FAD-dependent oxidoreductase -
  DBA17_RS12755 - 2975269..2976558 (-) 1290 WP_128789941.1 deoxyguanosinetriphosphate triphosphohydrolase -

Sequence

Protein


Download         Length: 371 a.a.        Molecular weight: 41086.82 Da        Isoelectric Point: 5.1365

>NTDB_id=245243 DBA17_RS12740 WP_128789938.1 2970714..2971829(-) (rpoS) [Streptomyces sp. endophyte_N2]
MPSPAYILEVALVQTQTLTPTAQSTGAGVDETDAEPDGVAAVPPQGRAPLHPEAGAEEAPAAARTESGGPSADLFRQYLR
EIGRIPLLTAAEEVELARRVEAGLFAEEKLSNTPDVDGELAHDLDRLVVLGRLAKRRLIEANLRLVVSVAKRYIGRGLTM
LDLVQEGNLGLIRAVEKFDYARGYKFSTYATWWIRQAMSRALADQARTIRVPVHVVELINRVVRVQRRMLQERGYEPTPE
EVAAHLDLPPERVGEVLRLAQEPISLHAPVGEEDDVALGDLIEDGDAASPMESAAFLLLKQHLEAVLSTLGERERKVVQL
RYGLLDGRPRTLEEIGRLFGVTRERIRQIESKTLNKLRDHAYADQLRGYLD

Nucleotide


Download         Length: 1116 bp        

>NTDB_id=245243 DBA17_RS12740 WP_128789938.1 2970714..2971829(-) (rpoS) [Streptomyces sp. endophyte_N2]
ATGCCGAGTCCGGCGTACATCCTGGAGGTCGCCCTCGTGCAGACCCAGACCCTCACCCCTACTGCCCAGAGCACCGGTGC
CGGCGTGGACGAGACGGACGCGGAGCCCGACGGCGTCGCGGCCGTGCCGCCGCAGGGGCGTGCCCCTCTGCATCCGGAGG
CGGGCGCCGAGGAGGCGCCGGCCGCGGCGCGGACCGAGAGCGGCGGGCCGTCCGCCGATCTGTTCCGGCAGTACCTGCGC
GAGATCGGCCGCATCCCGCTGCTCACCGCCGCCGAGGAGGTCGAGCTGGCCCGCCGGGTCGAGGCCGGGCTGTTCGCGGA
GGAGAAGCTGAGCAACACCCCTGATGTGGACGGCGAGTTGGCGCACGACCTGGACCGGCTGGTGGTCCTGGGGAGGCTGG
CCAAGCGCAGGCTGATCGAGGCCAATCTGCGGCTCGTCGTCTCCGTCGCCAAGCGGTACATCGGGCGCGGGCTCACCATG
CTCGACCTCGTGCAGGAGGGCAACCTCGGGCTGATCCGCGCCGTGGAGAAGTTCGACTACGCGCGCGGCTACAAGTTCTC
CACGTACGCCACCTGGTGGATCCGCCAGGCCATGTCCCGCGCCCTCGCCGACCAGGCCCGCACCATCCGCGTCCCGGTCC
ATGTCGTGGAGCTGATCAACCGGGTCGTACGGGTGCAGCGCCGGATGCTCCAGGAGCGCGGGTACGAGCCGACGCCCGAG
GAGGTCGCCGCCCATCTCGACCTTCCGCCCGAGCGGGTCGGCGAGGTGCTGCGGCTCGCCCAGGAGCCCATCTCGCTGCA
CGCCCCCGTCGGCGAGGAGGACGATGTGGCGCTCGGCGACCTCATCGAGGACGGCGACGCCGCGAGCCCCATGGAATCCG
CCGCGTTCCTGCTGCTCAAACAGCACCTGGAGGCTGTGCTGTCCACGCTGGGCGAGCGCGAGCGCAAGGTCGTACAGCTG
CGCTACGGCCTCCTCGACGGCCGCCCCCGCACCCTGGAGGAGATCGGCCGCCTCTTCGGCGTCACCCGCGAACGGATACG
GCAGATCGAGTCCAAGACGCTGAACAAGCTCAGGGACCACGCGTACGCCGACCAGTTGCGGGGCTACCTCGACTGA

Domains

Predicted by InterProScan.

Sigma-70 region 3 (Sigma70_r3)

(217-293)

Sigma-70, region 4 (Sigma70_r4)

(306-358)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(73-106)

Sigma-70 region 2 (Sigma70_r2)

(138-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

41.228

92.183

0.38

Multiple sequence alignment