Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   DBA17_RS12730 Genome accession   NZ_CP028719
Coordinates   2966989..2968722 (+) Length   577 a.a.
NCBI ID   WP_128789936.1    Uniprot ID   -
Organism   Streptomyces sp. endophyte_N2     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2961989..2973722
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DBA17_RS12690 - 2962533..2963021 (+) 489 WP_128789932.1 hypothetical protein -
  DBA17_RS12695 - 2963658..2963843 (+) 186 WP_128789933.1 tyrosine-type recombinase/integrase -
  DBA17_RS12700 - 2963843..2964301 (+) 459 WP_128789934.1 hypothetical protein -
  DBA17_RS12720 - 2965025..2965330 (+) 306 WP_037655214.1 hypothetical protein -
  DBA17_RS12725 - 2965360..2966808 (+) 1449 WP_128789935.1 FGGY family carbohydrate kinase -
  DBA17_RS12730 rcrP 2966989..2968722 (+) 1734 WP_128789936.1 ABC transporter ATP-binding protein Regulator
  DBA17_RS12735 rcrQ 2968722..2970650 (+) 1929 WP_128789937.1 ABC transporter ATP-binding protein Regulator
  DBA17_RS12740 rpoS 2970714..2971829 (-) 1116 WP_128789938.1 RNA polymerase sigma factor Regulator

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62821.13 Da        Isoelectric Point: 6.1941

>NTDB_id=245241 DBA17_RS12730 WP_128789936.1 2966989..2968722(+) (rcrP) [Streptomyces sp. endophyte_N2]
MLIRLLRTYLRPYKKPITVQVLLQFLQTCATLYLPTLNAHIIDNGVVKGDTGYILSFGALMIGISLVQVVCNIGAVYLGA
RTASALGRDMRAAVFDRVQSFSSREVGHFGAPSLITRTTNDVQQIQMLVLMTFTLMVSAPIMCVGGIVLALGLDVPLSGV
LIAVVPVLAICVTLIVRKLRPLFRTMQTRLDKVNQVLREQITGNRVIRAFVRDEYEQARFGRVNGELTEMQLATGRLLSL
MFPMVMTVVNVSSIAVVWFGAHRIDSGGMQIGDLTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERVQEVMDTGSSVLP
PLAPVTELRRHGHLEIREAGFRYPGAEEPVLRSVALEARPGETTAVIGSTGSGKSTLLGLVPRLFDATEGEVLVNGVDVR
EVDPALLARTVGLVPQKPYLFAGTVATNLRYGNPDATDEELWHALEVAQAKDFVTELEGGLDASIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALTRETAEATVVIVAQRVATIRDADRIIVLDEGRVVGSGRHQELMAGN
DTYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=245241 DBA17_RS12730 WP_128789936.1 2966989..2968722(+) (rcrP) [Streptomyces sp. endophyte_N2]
GTGCTCATACGACTTCTGCGGACCTATCTCAGGCCCTACAAGAAACCCATAACCGTGCAGGTCCTGCTCCAGTTCTTGCA
GACCTGCGCCACCCTGTACCTGCCCACCCTGAACGCCCACATCATCGACAACGGCGTCGTGAAGGGGGACACGGGGTACA
TCCTGTCCTTCGGCGCCCTGATGATCGGCATCTCGCTGGTGCAGGTCGTGTGCAACATCGGCGCCGTCTACCTGGGCGCC
CGCACTGCCTCGGCGCTCGGCCGGGACATGCGCGCCGCCGTCTTCGACCGGGTGCAGTCCTTCTCCTCGCGTGAGGTGGG
TCACTTCGGCGCGCCCTCGCTGATCACGCGCACCACGAACGACGTCCAGCAGATCCAGATGCTGGTCCTGATGACGTTCA
CGCTGATGGTGTCGGCGCCCATCATGTGCGTCGGCGGCATCGTGCTGGCGCTCGGCCTGGACGTGCCGCTGTCCGGGGTG
CTGATCGCGGTCGTCCCGGTGCTGGCCATCTGTGTGACGCTGATCGTGCGCAAGCTGCGCCCGCTGTTCCGCACCATGCA
GACCCGCCTGGACAAGGTGAACCAGGTGCTGCGCGAGCAGATCACCGGCAACCGGGTGATCCGCGCCTTCGTCCGCGACG
AGTACGAGCAGGCCCGCTTCGGCCGGGTCAACGGCGAGCTGACCGAGATGCAGCTGGCCACCGGGCGGCTGCTGTCGCTG
ATGTTCCCGATGGTGATGACCGTCGTGAACGTGTCCTCCATCGCGGTGGTGTGGTTCGGCGCGCACCGCATCGACAGCGG
CGGGATGCAGATCGGCGACCTGACGGCGTTCCTCGCCTATCTGATGCAGATCGTGATGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCGGAGGTGTGCGCCGAGCGGGTCCAGGAGGTCATGGACACCGGTTCCAGCGTGCTGCCG
CCGCTCGCGCCGGTCACCGAGCTGCGCCGGCACGGGCATCTGGAGATCCGCGAGGCCGGCTTCCGCTATCCGGGCGCCGA
GGAGCCGGTGCTGCGCTCCGTCGCCCTGGAGGCCCGGCCCGGCGAGACCACGGCCGTGATCGGGTCCACCGGCAGCGGTA
AGTCGACGCTGCTCGGGCTGGTCCCGCGGCTGTTCGACGCCACCGAGGGCGAGGTCCTGGTGAACGGCGTGGACGTCCGC
GAGGTCGACCCGGCGCTGCTGGCACGGACGGTCGGACTCGTGCCGCAGAAGCCGTACCTCTTCGCGGGCACCGTCGCCAC
CAACCTGCGCTACGGCAATCCGGACGCCACCGACGAGGAGCTGTGGCACGCGCTGGAGGTGGCGCAGGCCAAGGACTTCG
TCACCGAGCTGGAGGGCGGCCTGGACGCGTCGATCGCCCAGGGCGGCACCAATGTGTCGGGCGGTCAGCGCCAGCGGCTC
GCGATCGCCCGCACGCTCGTGCAGCGCCCGGAGATCTATCTGTTCGACGACTCCTTCTCCGCGCTCGACTACGCCACCGA
CGCGGCCCTGCGTGCCGCGCTGACACGCGAGACCGCCGAGGCGACCGTCGTCATCGTCGCCCAGCGGGTGGCGACCATCC
GGGACGCCGACCGGATCATCGTCCTCGACGAGGGCCGGGTGGTCGGCTCCGGCCGGCACCAGGAGCTGATGGCGGGCAAC
GACACCTACCGGGAGATCGTGCTCTCCCAGCTGACGGAAGCGGAGGCCGCCTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(351-498)

ABC transporter transmembrane region (ABC_membrane)

(19-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40.248

97.747

0.393