Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   DBA17_RS06400 Genome accession   NZ_CP028719
Coordinates   1577955..1578614 (+) Length   219 a.a.
NCBI ID   WP_128789041.1    Uniprot ID   -
Organism   Streptomyces sp. endophyte_N2     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1572955..1583614
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DBA17_RS06375 purB 1573042..1574484 (+) 1443 WP_128789036.1 adenylosuccinate lyase -
  DBA17_RS06380 mug 1574541..1575029 (+) 489 WP_233534408.1 G/U mismatch-specific DNA glycosylase -
  DBA17_RS06385 - 1575031..1575747 (-) 717 WP_128789038.1 ABC transporter permease -
  DBA17_RS06390 - 1575750..1576670 (-) 921 WP_128789039.1 ATP-binding cassette domain-containing protein -
  DBA17_RS06395 - 1576778..1577932 (+) 1155 WP_128789040.1 histidine kinase -
  DBA17_RS06400 vraR 1577955..1578614 (+) 660 WP_128789041.1 response regulator transcription factor Regulator
  DBA17_RS06405 - 1578711..1579868 (+) 1158 WP_037658726.1 ROK family transcriptional regulator -
  DBA17_RS06410 - 1579913..1580833 (-) 921 WP_128789042.1 alpha/beta fold hydrolase -
  DBA17_RS06415 - 1581056..1581817 (-) 762 WP_086811863.1 GntR family transcriptional regulator -
  DBA17_RS06420 - 1582057..1582941 (-) 885 WP_128789043.1 RNA polymerase sigma-70 factor -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 23473.22 Da        Isoelectric Point: 6.5082

>NTDB_id=245231 DBA17_RS06400 WP_128789041.1 1577955..1578614(+) (vraR) [Streptomyces sp. endophyte_N2]
MPVTVLLVDDEPLVRAGLRAVLGAQPDIEVVGEAADGAAVIPLVRRLRPDVVAMDVRMPLLDGIEATRAVLRTVADPPKI
LVVTTFEDDEYVYEALRAGADGFLLKRARPAEIVHAVRLVAEGESLLFPASVRRLAKRYGDGGGRPARSVLERARLTERE
AEVLRLMARGLSNAEIAAGLVVGAETVKSHVSAVLAKLGARDRTQAVIAAYESGFVEPR

Nucleotide


Download         Length: 660 bp        

>NTDB_id=245231 DBA17_RS06400 WP_128789041.1 1577955..1578614(+) (vraR) [Streptomyces sp. endophyte_N2]
ATGCCGGTCACCGTACTCCTCGTCGACGACGAACCACTGGTCCGCGCGGGGCTGCGGGCCGTGCTCGGGGCGCAGCCCGA
CATCGAGGTGGTGGGCGAGGCGGCCGACGGCGCGGCGGTGATCCCGCTGGTGCGGCGACTGCGGCCCGATGTCGTGGCCA
TGGATGTGCGGATGCCGCTGCTGGACGGCATCGAGGCCACCCGCGCGGTGCTGCGCACGGTCGCCGACCCGCCGAAGATC
CTCGTGGTGACCACCTTCGAGGACGACGAGTATGTGTACGAGGCACTGCGCGCGGGCGCCGACGGGTTCCTGTTGAAGCG
GGCCCGGCCCGCCGAGATCGTGCACGCGGTACGGCTGGTCGCGGAGGGCGAGTCACTGCTGTTTCCGGCCTCGGTACGAC
GACTCGCTAAGCGGTACGGCGACGGCGGAGGGCGGCCCGCGCGGTCCGTCCTGGAGCGGGCGCGGCTGACCGAGCGGGAG
GCGGAGGTGCTGCGGCTGATGGCGCGCGGGCTGTCCAACGCGGAGATCGCCGCTGGTCTTGTGGTGGGCGCGGAGACGGT
CAAGTCGCATGTGAGCGCCGTACTGGCCAAGCTCGGCGCGCGCGACCGTACGCAGGCGGTGATCGCGGCGTACGAGTCGG
GGTTCGTGGAGCCGCGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-118)

Bacterial regulatory proteins, luxR family (GerE)

(156-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

41.553

100

0.416
  degU Bacillus subtilis subsp. subtilis str. 168

37.004

100

0.384

Multiple sequence alignment