Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   CJF59_RS11820 Genome accession   NZ_CP023189
Coordinates   2474337..2475362 (+) Length   341 a.a.
NCBI ID   WP_269320058.1    Uniprot ID   -
Organism   Acetobacter pomorum strain SH     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2469337..2480362
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CJF59_RS11800 (CJF59_11755) - 2469799..2470275 (+) 477 WP_035352952.1 hypothetical protein -
  CJF59_RS11805 (CJF59_11760) hemA 2470336..2471643 (+) 1308 WP_006116631.1 5-aminolevulinate synthase -
  CJF59_RS11810 (CJF59_11765) - 2471695..2472573 (-) 879 WP_089178334.1 DsbA family protein -
  CJF59_RS11815 (CJF59_11770) - 2472621..2474075 (+) 1455 WP_089178335.1 gamma-glutamyltransferase -
  CJF59_RS11820 (CJF59_11775) recA 2474337..2475362 (+) 1026 WP_269320058.1 recombinase RecA Machinery gene
  CJF59_RS11825 (CJF59_11780) - 2475369..2475881 (-) 513 WP_089178336.1 GNAT family N-acetyltransferase -
  CJF59_RS11830 (CJF59_11785) - 2475951..2476316 (+) 366 WP_006116636.1 winged helix-turn-helix domain-containing protein -
  CJF59_RS11835 (CJF59_11790) - 2476383..2477927 (+) 1545 WP_089178337.1 glucan biosynthesis protein -
  CJF59_RS11840 (CJF59_11795) mdoH 2477930..2480062 (+) 2133 WP_193561102.1 glucans biosynthesis glucosyltransferase MdoH -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 36677.02 Da        Isoelectric Point: 6.7070

>NTDB_id=245225 CJF59_RS11820 WP_269320058.1 2474337..2475362(+) (recA) [Acetobacter pomorum strain SH]
MDKAKALEGALGQIERAFGKGSVMRLGQRPKVEADVIPTGSLGLDIALGIGGLPRGRVVEIYGPESSGKTTLALHAIAEA
QKRGGTCAFIDAEHALDPGYAKKLGVDVDNLLISQPDAGEQALEIADTLVRSGAIDVLVVDSVAALVPRAELEGDMGDSH
VGLHARLMSQALRKLTGTVARSNTLMIFLNQIRLKIGVMFGNPETTTGGNALKFYSSVRMDIRRIGSIKDKDEVTGNQTR
VKVVKNKMAPPFRQVEFDIMYGEGISKVGELIDLGVKAGVVEKSGSWFSYDSQRIGQGRENAKQFLRDHPEMAADIERRV
REHAGVVAEAMMVAPEHHEGD

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=245225 CJF59_RS11820 WP_269320058.1 2474337..2475362(+) (recA) [Acetobacter pomorum strain SH]
ATGGATAAGGCAAAGGCTCTGGAAGGCGCGCTGGGACAGATTGAACGTGCTTTTGGCAAAGGTTCTGTCATGCGCTTGGG
GCAGCGGCCCAAGGTAGAGGCAGATGTTATTCCTACTGGTTCCCTTGGGCTGGATATTGCGCTGGGTATTGGTGGGTTGC
CCCGTGGCCGTGTGGTGGAAATTTACGGGCCAGAAAGCTCTGGTAAAACCACGCTTGCGCTGCATGCTATTGCAGAAGCA
CAAAAGCGTGGTGGCACTTGTGCTTTTATTGATGCCGAGCATGCGTTGGACCCCGGTTATGCCAAAAAGCTGGGCGTGGA
TGTAGATAACCTGCTGATCAGCCAGCCAGATGCGGGTGAACAGGCGTTGGAAATTGCAGATACACTCGTGCGATCCGGCG
CTATTGACGTTTTGGTGGTAGATAGTGTTGCAGCACTGGTGCCGCGCGCAGAACTGGAAGGAGACATGGGCGATAGCCAT
GTTGGCCTTCATGCGCGTTTGATGAGCCAGGCTTTGCGTAAGCTTACGGGTACGGTGGCACGCTCCAATACTCTGATGAT
TTTCCTGAACCAGATCCGCCTGAAAATTGGTGTGATGTTTGGTAATCCGGAAACAACCACGGGTGGTAATGCCCTGAAGT
TCTATTCTTCCGTGCGTATGGATATTCGCCGCATCGGATCCATCAAGGACAAGGATGAGGTGACAGGTAATCAGACGCGC
GTAAAGGTTGTTAAAAACAAGATGGCGCCACCTTTCCGTCAGGTAGAATTTGATATCATGTACGGCGAAGGCATCAGTAA
GGTTGGTGAGCTGATTGATCTTGGCGTAAAAGCCGGAGTTGTTGAAAAATCTGGCTCATGGTTTTCATACGATAGCCAGC
GCATTGGGCAGGGGCGTGAAAATGCCAAGCAGTTCTTGCGTGATCACCCAGAAATGGCCGCGGATATTGAACGCCGCGTG
CGTGAACACGCAGGCGTTGTTGCCGAGGCTATGATGGTGGCACCAGAACACCATGAAGGTGACTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(5-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

69.512

96.188

0.669
  recA Neisseria gonorrhoeae MS11

68.405

95.601

0.654
  recA Neisseria gonorrhoeae MS11

68.405

95.601

0.654
  recA Neisseria gonorrhoeae strain FA1090

68.405

95.601

0.654
  recA Pseudomonas stutzeri DSM 10701

66.168

97.947

0.648
  recA Glaesserella parasuis strain SC1401

68.339

93.548

0.639
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.497

99.12

0.639
  recA Vibrio cholerae strain A1552

64.497

99.12

0.639
  recA Bacillus subtilis subsp. subtilis str. 168

66.462

95.308

0.633
  recA Acinetobacter baylyi ADP1

67.081

94.428

0.633
  recA Acinetobacter baumannii D1279779

66.46

94.428

0.628
  recA Helicobacter pylori 26695

63.127

99.413

0.628
  recA Helicobacter pylori strain NCTC11637

62.832

99.413

0.625
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.463

100

0.625
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.914

95.894

0.613
  recA Streptococcus pyogenes NZ131

58.79

100

0.598
  recA Latilactobacillus sakei subsp. sakei 23K

62.462

95.308

0.595
  recA Streptococcus mutans UA159

60.542

97.361

0.589
  recA Streptococcus mitis SK321

60.303

96.774

0.584
  recA Streptococcus mitis NCTC 12261

60

96.774

0.581
  recA Streptococcus pneumoniae TIGR4

59.697

96.774

0.578
  recA Streptococcus pneumoniae R6

59.697

96.774

0.578
  recA Streptococcus pneumoniae Rx1

59.697

96.774

0.578
  recA Streptococcus pneumoniae D39

59.697

96.774

0.578
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.312

93.842

0.566
  recA Lactococcus lactis subsp. cremoris KW2

57.53

97.361

0.56

Multiple sequence alignment