Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   DBA17_RS02585 Genome accession   NZ_CP028719
Coordinates   679938..680570 (-) Length   210 a.a.
NCBI ID   WP_128788460.1    Uniprot ID   A0A7W3NJ41
Organism   Streptomyces sp. endophyte_N2     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 674938..685570
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DBA17_RS02560 - 675830..676222 (+) 393 WP_085563414.1 VOC family protein -
  DBA17_RS02565 - 676403..676753 (+) 351 WP_085563413.1 metalloregulator ArsR/SmtB family transcription factor -
  DBA17_RS02570 bla 676955..677866 (-) 912 WP_128788457.1 class A beta-lactamase -
  DBA17_RS02575 - 677994..678956 (+) 963 WP_128788458.1 LysR family transcriptional regulator -
  DBA17_RS02580 - 678953..679900 (+) 948 WP_128788459.1 serine hydrolase -
  DBA17_RS02585 vraR 679938..680570 (-) 633 WP_128788460.1 response regulator transcription factor Regulator
  DBA17_RS02590 - 680567..681760 (-) 1194 WP_128793474.1 sensor histidine kinase -
  DBA17_RS02595 - 681971..682537 (+) 567 WP_128788461.1 heme-binding protein -
  DBA17_RS02600 katG 682670..684895 (-) 2226 WP_128788462.1 catalase/peroxidase HPI -
  DBA17_RS02605 - 684929..685366 (-) 438 WP_128788463.1 Fur family transcriptional regulator -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 22436.86 Da        Isoelectric Point: 8.9868

>NTDB_id=245225 DBA17_RS02585 WP_128788460.1 679938..680570(-) (vraR) [Streptomyces sp. endophyte_N2]
MTERPVRILVCDDHAVVRAGLLALLHSTPDIEVVGEAGSGEEALALARKTAPDVVLMDLQLGAGIDGVETTRRLRATSPA
PHVLVLTTYDTDADVTRAVAAGATGYLLKAERAEDLFTAIHAAARGRPALSPPVADRVMSRLRNPRPALTPRERDILAQL
AQGLPNHAIARALFISEATVKTHLRRIYDKLGVDTRAGAVAVAKEQRLLS

Nucleotide


Download         Length: 633 bp        

>NTDB_id=245225 DBA17_RS02585 WP_128788460.1 679938..680570(-) (vraR) [Streptomyces sp. endophyte_N2]
ATGACCGAACGCCCCGTACGCATCCTGGTCTGCGACGACCATGCCGTCGTACGCGCCGGACTGCTCGCCCTGCTGCACAG
CACCCCGGACATCGAGGTCGTCGGCGAGGCGGGCAGCGGCGAGGAGGCCCTGGCGCTGGCCCGGAAGACCGCGCCCGACG
TCGTCCTGATGGACCTCCAGCTCGGCGCGGGCATCGACGGTGTCGAGACCACCCGGCGGCTGCGCGCCACGAGCCCCGCG
CCGCACGTCCTCGTGCTCACCACCTACGACACGGACGCCGATGTCACCCGAGCCGTGGCGGCGGGCGCCACCGGGTATCT
GCTCAAGGCCGAGCGCGCCGAGGACCTGTTCACCGCGATCCACGCCGCCGCCCGGGGCCGCCCCGCGCTCTCGCCCCCGG
TCGCCGACCGCGTCATGTCCCGGCTGCGCAACCCGCGCCCCGCCCTCACCCCGCGCGAACGCGACATCCTCGCCCAGCTC
GCCCAGGGCCTGCCCAACCATGCCATCGCCCGCGCCCTGTTCATCAGCGAGGCCACGGTGAAGACGCATCTGCGGCGCAT
CTACGACAAGCTCGGCGTGGACACGCGCGCCGGCGCGGTCGCGGTGGCGAAGGAGCAGCGGCTGCTGTCCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(148-203)

Response regulator receiver domain (Response_reg)

(8-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7W3NJ41

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

39.423

99.048

0.39
  degU Bacillus subtilis subsp. subtilis str. 168

35.78

100

0.371

Multiple sequence alignment