Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   TK_RS03125 Genome accession   NC_006624
Coordinates   537854..538216 (+) Length   120 a.a.
NCBI ID   WP_011249583.1    Uniprot ID   Q5JF96
Organism   Thermococcus kodakarensis KOD1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 532854..543216
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TK_RS03105 (TK0628) - 533826..534923 (+) 1098 WP_048053673.1 hypothetical protein -
  TK_RS03110 (TK0629) - 534924..535361 (-) 438 WP_011249580.1 chemotaxis protein CheW -
  TK_RS03115 (TK0630) - 535373..536689 (-) 1317 WP_011249581.1 methyl-accepting chemotaxis protein -
  TK_RS03120 (TK0631) - 537014..537853 (+) 840 WP_011249582.1 CheR family methyltransferase -
  TK_RS03125 (TK0632) pilH 537854..538216 (+) 363 WP_011249583.1 response regulator Machinery gene
  TK_RS03130 (TK0633) - 538237..539304 (+) 1068 WP_011249584.1 protein-glutamate methylesterase/protein-glutamine glutaminase -
  TK_RS03135 (TK0634) - 539311..541688 (+) 2378 Protein_639 chemotaxis protein CheA -
  TK_RS03140 (TK0636) - 541678..542301 (+) 624 WP_011249587.1 chemotaxis protein CheC -
  TK_RS03145 (TK0637) - 542298..542921 (+) 624 WP_011249588.1 chemotaxis protein CheC -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13126.67 Da        Isoelectric Point: 9.4716

>NTDB_id=24522 TK_RS03125 WP_011249583.1 537854..538216(+) (pilH) [Thermococcus kodakarensis KOD1]
MARVLVVDDAAFMRMLVKKILTQAGHQVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEMDGITAVKEIMKIDPNAKIIMI
TAVGQEAKVMEALKSGAKGYIVKPFQAPKVIEEVNRVLSS

Nucleotide


Download         Length: 363 bp        

>NTDB_id=24522 TK_RS03125 WP_011249583.1 537854..538216(+) (pilH) [Thermococcus kodakarensis KOD1]
ATGGCACGCGTGCTTGTTGTTGACGATGCCGCGTTTATGCGGATGCTGGTTAAGAAGATACTGACTCAGGCCGGCCACCA
GGTGGTTGGGGAGGCAAGCAACGGAAAGGAGGCGGTTGAGAAATACAAACAGCTGAAGCCTGATCTGGTGACTATGGACA
TAGTCATGCCCGAAATGGACGGAATTACCGCGGTCAAAGAGATCATGAAGATAGATCCGAACGCCAAGATCATCATGATC
ACCGCCGTCGGTCAGGAGGCAAAGGTCATGGAAGCCCTCAAGAGTGGAGCCAAGGGCTACATCGTTAAACCGTTCCAGGC
TCCGAAGGTGATAGAGGAAGTGAACAGGGTTCTCTCCTCTTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5JF96

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

37.398

100

0.383
  vraR Staphylococcus aureus N315

38.793

96.667

0.375