Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   SYC_RS06410 Genome accession   NC_006576
Coordinates   1319435..1320874 (+) Length   479 a.a.
NCBI ID   WP_011377526.1    Uniprot ID   Q31RI5
Organism   Synechococcus elongatus PCC 6301     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1314435..1325874
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SYC_RS06385 (syc1206_d) - 1314946..1316172 (+) 1227 WP_011377529.1 cation:proton antiporter -
  SYC_RS06390 - 1316550..1316840 (-) 291 WP_039755475.1 type II toxin-antitoxin system RelE/ParE family toxin -
  SYC_RS06395 - 1316837..1317067 (-) 231 WP_011377528.1 addiction module protein -
  SYC_RS06400 (syc1208_c) - 1317402..1318049 (-) 648 WP_011243520.1 Coq4 family protein -
  SYC_RS06405 (syc1209_c) - 1318185..1319273 (-) 1089 WP_011243521.1 potassium channel family protein -
  SYC_RS06410 (syc1210_d) comA 1319435..1320874 (+) 1440 WP_011377526.1 phospholipase D-like domain-containing protein Machinery gene
  SYC_RS06415 (syc1211_c) ssb 1320892..1321254 (-) 363 WP_011377525.1 single-stranded DNA-binding protein Machinery gene
  SYC_RS06420 (syc1212_d) - 1321483..1322484 (+) 1002 WP_039755477.1 rod shape-determining protein -
  SYC_RS06425 (syc1213_d) mreC 1322509..1323258 (+) 750 WP_011243525.1 rod shape-determining protein MreC -
  SYC_RS06430 (syc1214_d) mreD 1323219..1323902 (+) 684 WP_011243526.1 rod shape-determining protein MreD -

Sequence

Protein


Download         Length: 479 a.a.        Molecular weight: 53029.45 Da        Isoelectric Point: 6.1246

>NTDB_id=24498 SYC_RS06410 WP_011377526.1 1319435..1320874(+) (comA) [Synechococcus elongatus PCC 6301]
MKSGVLALLLGLLTACQAPLAQIQSSGQGAADRWDANAPVQVAFNHNPDQRFTDSLGRDREGDDLEGQLLASLEQAQTSI
DVAVQEIQVPRLATALIQKHQAGIPVRVIVENQYRQPWSQRLSGNLSDRERQRLENYRQIADRNGDGQLSPAEIAGGDAV
LMLERAGVPILDDTDDGSQGSGLMHHKFAIIDRRWVVTGSANWTASDFFGDPGRPASRGNANHLLWFRSPALAAIFQEEF
NLMWGDGPSKLPDSRFGLGKPLRSPKSVRIGNTRLLVQFSPTSPRLPWQESTNGTIARYLTQAQKQIDLALFVFSEQAIA
DVLEARSQQGTQVRLLIDPGFAYRPYSELLDMVGLALPDRDCRVESNNRPWSSPLTTAGAPRLTPGDTLHHKFAVIDRQR
VLTGSHNWSAAANLRNDETFLVIEDSSLADRFRAEFERLYADAFLGIPPALQRRVNEAKRRCGSRITPNSNQDLTETED

Nucleotide


Download         Length: 1440 bp        

>NTDB_id=24498 SYC_RS06410 WP_011377526.1 1319435..1320874(+) (comA) [Synechococcus elongatus PCC 6301]
ATGAAGTCTGGAGTACTCGCCCTTTTGCTGGGGCTACTGACTGCCTGCCAAGCTCCACTGGCACAAATTCAGTCTTCGGG
GCAGGGCGCAGCCGATCGCTGGGATGCCAACGCTCCCGTGCAAGTCGCGTTCAATCACAACCCAGATCAGCGATTTACCG
ATAGCTTGGGCCGCGATCGCGAAGGTGATGATTTGGAAGGACAACTCCTCGCCAGCCTAGAGCAGGCTCAAACATCGATC
GATGTCGCGGTTCAGGAAATTCAGGTGCCCCGCTTAGCGACTGCTTTGATCCAAAAACACCAAGCGGGCATTCCCGTTCG
CGTCATTGTGGAAAACCAGTATCGCCAACCTTGGAGTCAACGACTGTCAGGCAACCTGAGTGATCGCGAGCGGCAGCGAC
TAGAGAACTACCGACAGATAGCCGATCGCAATGGTGATGGCCAACTCAGTCCCGCCGAAATTGCTGGCGGGGATGCTGTG
TTAATGCTGGAGCGCGCTGGTGTACCGATTCTGGACGACACCGACGACGGCAGCCAAGGCAGCGGGTTGATGCACCATAA
GTTCGCGATCATCGATCGCCGCTGGGTTGTCACCGGCTCTGCCAACTGGACAGCCAGCGATTTCTTTGGCGATCCGGGCC
GACCTGCCAGTCGTGGCAATGCCAATCATCTGCTCTGGTTCCGCAGCCCAGCGCTCGCAGCGATTTTCCAAGAAGAATTC
AACCTGATGTGGGGCGATGGCCCCAGTAAATTGCCGGATAGCCGCTTTGGCCTTGGTAAGCCCTTGCGATCGCCTAAATC
GGTCCGTATTGGCAACACGCGCCTGCTGGTTCAGTTTTCGCCCACTAGTCCCCGGCTACCGTGGCAGGAAAGCACCAACG
GCACAATCGCCCGTTACCTCACCCAAGCCCAGAAGCAGATCGATCTAGCACTGTTTGTCTTTTCGGAACAAGCGATCGCC
GATGTTTTAGAAGCGCGATCGCAGCAAGGTACTCAAGTGCGACTGTTAATTGACCCTGGCTTTGCCTATCGTCCCTACAG
CGAACTGCTAGATATGGTCGGCCTAGCGCTTCCCGATCGCGACTGCCGGGTTGAGTCAAACAATCGCCCTTGGAGTAGTC
CCCTCACAACAGCAGGAGCGCCACGACTGACGCCCGGCGACACGCTCCACCACAAATTTGCCGTGATTGATCGCCAGCGC
GTCCTGACCGGATCTCACAACTGGAGTGCCGCAGCCAACCTCAGAAATGACGAAACATTTTTAGTGATCGAGGACTCTAG
TTTGGCCGATCGCTTTCGGGCAGAATTTGAGCGACTCTACGCTGATGCCTTCTTAGGTATTCCGCCAGCCCTGCAGCGCC
GCGTCAATGAGGCGAAGCGACGCTGCGGTAGCCGAATCACTCCGAACAGCAATCAGGACTTAACCGAAACTGAGGATTGA

Domains

Predicted by InterProScan.

PLD-like domain (PLDc_2)

(70-244)

PLD-like domain (PLDc_2)

(298-439)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q31RI5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Synechocystis sp. PCC 6803

45.622

90.605

0.413