Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | LDL34_RS00040 | Genome accession | NZ_CP023139 |
| Coordinates | 9544..10122 (+) | Length | 192 a.a. |
| NCBI ID | WP_003616385.1 | Uniprot ID | A0A2I1SID3 |
| Organism | Lactobacillus delbrueckii subsp. lactis strain KCTC 3034 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 4544..15122
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LDL34_RS00025 (LDL34_00025) | gyrB | 4549..6510 (+) | 1962 | WP_003616387.1 | DNA topoisomerase (ATP-hydrolyzing) subunit B | - |
| LDL34_RS00030 (LDL34_00030) | gyrA | 6523..8994 (+) | 2472 | WP_002879428.1 | DNA gyrase subunit A | - |
| LDL34_RS00035 (LDL34_00035) | rpsF | 9210..9503 (+) | 294 | WP_003612647.1 | 30S ribosomal protein S6 | - |
| LDL34_RS00040 (LDL34_00040) | ssb | 9544..10122 (+) | 579 | WP_003616385.1 | single-stranded DNA-binding protein | Machinery gene |
| LDL34_RS00045 (LDL34_00045) | rpsR | 10149..10385 (+) | 237 | WP_002879432.1 | 30S ribosomal protein S18 | - |
| LDL34_RS00050 (LDL34_00050) | - | 10526..12547 (+) | 2022 | WP_035164326.1 | DHH family phosphoesterase | - |
| LDL34_RS00055 (LDL34_00055) | rplI | 12570..13025 (+) | 456 | WP_013438865.1 | 50S ribosomal protein L9 | - |
| LDL34_RS00060 (LDL34_00060) | dnaB | 13049..14419 (+) | 1371 | WP_016396059.1 | replicative DNA helicase | - |
Sequence
Protein
Download Length: 192 a.a. Molecular weight: 20667.31 Da Isoelectric Point: 4.5431
>NTDB_id=244853 LDL34_RS00040 WP_003616385.1 9544..10122(+) (ssb) [Lactobacillus delbrueckii subsp. lactis strain KCTC 3034]
MINNVVLVGRLTRDPELRTTGSGISVATFTLAVDRQFTNASGQREADFISCVIWRKAAENFCNFTSKGSLVGIQGRIQTR
NYDNKDGQRVYVTEVLVDNFSLLESRRERESRQQNGGFGGQGQSQNTGFNTGFGGGSGYANDNAFGSPAQSNGPANAGFN
EDNKKDAGGDTNTNPFDSSDDAINVSNDDLPF
MINNVVLVGRLTRDPELRTTGSGISVATFTLAVDRQFTNASGQREADFISCVIWRKAAENFCNFTSKGSLVGIQGRIQTR
NYDNKDGQRVYVTEVLVDNFSLLESRRERESRQQNGGFGGQGQSQNTGFNTGFGGGSGYANDNAFGSPAQSNGPANAGFN
EDNKKDAGGDTNTNPFDSSDDAINVSNDDLPF
Nucleotide
Download Length: 579 bp
>NTDB_id=244853 LDL34_RS00040 WP_003616385.1 9544..10122(+) (ssb) [Lactobacillus delbrueckii subsp. lactis strain KCTC 3034]
ATGATCAATAACGTTGTACTTGTTGGCCGTTTAACACGTGATCCTGAATTACGTACTACTGGGAGCGGCATCTCGGTTGC
TACGTTCACTTTGGCCGTTGACCGGCAGTTTACCAATGCATCAGGCCAGAGAGAAGCGGACTTCATCAGCTGCGTGATTT
GGCGCAAGGCTGCTGAGAACTTCTGCAACTTCACCAGCAAGGGCAGTTTGGTGGGCATCCAGGGCCGAATCCAGACCAGA
AACTATGATAACAAGGACGGCCAGCGAGTTTACGTGACAGAAGTCCTCGTGGACAACTTCTCACTGCTCGAATCACGCCG
CGAGCGTGAAAGCCGTCAGCAAAACGGCGGATTTGGCGGCCAAGGTCAAAGCCAAAACACCGGCTTCAACACCGGATTTG
GCGGCGGCAGCGGCTACGCCAACGACAACGCCTTCGGCAGCCCGGCCCAGTCAAACGGGCCAGCTAATGCCGGATTCAAT
GAAGATAACAAGAAAGATGCCGGCGGAGACACGAACACCAACCCGTTCGACAGCTCTGACGATGCAATCAACGTCTCAAA
TGACGATCTTCCATTTTAA
ATGATCAATAACGTTGTACTTGTTGGCCGTTTAACACGTGATCCTGAATTACGTACTACTGGGAGCGGCATCTCGGTTGC
TACGTTCACTTTGGCCGTTGACCGGCAGTTTACCAATGCATCAGGCCAGAGAGAAGCGGACTTCATCAGCTGCGTGATTT
GGCGCAAGGCTGCTGAGAACTTCTGCAACTTCACCAGCAAGGGCAGTTTGGTGGGCATCCAGGGCCGAATCCAGACCAGA
AACTATGATAACAAGGACGGCCAGCGAGTTTACGTGACAGAAGTCCTCGTGGACAACTTCTCACTGCTCGAATCACGCCG
CGAGCGTGAAAGCCGTCAGCAAAACGGCGGATTTGGCGGCCAAGGTCAAAGCCAAAACACCGGCTTCAACACCGGATTTG
GCGGCGGCAGCGGCTACGCCAACGACAACGCCTTCGGCAGCCCGGCCCAGTCAAACGGGCCAGCTAATGCCGGATTCAAT
GAAGATAACAAGAAAGATGCCGGCGGAGACACGAACACCAACCCGTTCGACAGCTCTGACGATGCAATCAACGTCTCAAA
TGACGATCTTCCATTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
58.031 |
100 |
0.583 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
47.396 |
100 |
0.474 |