Detailed information NTG0244742

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: CK238_RS02010
• Genome accession: NZ_CP023075
• Coordinates: 395170..396318 (+)
• Length: 382 a.a.
• NCBI ID: WP_003156336.1
• Uniprot ID: -
• Organism: Bacillus velezensis strain K26
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 390170..401318

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CK238_RS01990 (CK238_01980)	-	390570..391253 (-)	684	WP_063636994.1	ABC transporter ATP-binding protein	-
CK238_RS01995 (CK238_01985)	-	391268..392701 (-)	1434	WP_063636993.1	ABC transporter permease	-
CK238_RS02000 (CK238_01990)	-	392914..393597 (+)	684	WP_014416901.1	response regulator transcription factor	-
CK238_RS02005 (CK238_01995)	-	393584..395011 (+)	1428	WP_103527150.1	HAMP domain-containing sensor histidine kinase	-
CK238_RS02010 (CK238_02000)	rapC	395170..396318 (+)	1149	WP_003156336.1	Rap family tetratricopeptide repeat protein	Regulator
CK238_RS02015 (CK238_02005)	phrC	396302..396421 (+)	120	WP_003156334.1	PhrC/PhrF family phosphatase-inhibitory pheromone	Regulator
CK238_RS02020 (CK238_02010)	-	396571..396666 (-)	96	WP_012116800.1	YjcZ family sporulation protein	-
CK238_RS02025 (CK238_02015)	-	396761..398125 (-)	1365	WP_017419273.1	aspartate kinase	-
CK238_RS02035 (CK238_02025)	ceuB	398539..399492 (+)	954	WP_014416904.1	ABC transporter permease	Machinery gene
CK238_RS02040 (CK238_02030)	-	399482..400429 (+)	948	WP_014416905.1	iron chelate uptake ABC transporter family permease subunit	-
CK238_RS02045 (CK238_02035)	-	400423..401181 (+)	759	WP_063636991.1	ABC transporter ATP-binding protein	-

Sequence

Protein

• Length: 382 a.a.
• Molecular weight: 45521.82 Da
• Isoelectric Point: 5.0732

>NTDB_id=244742 CK238_RS02010 WP_003156336.1 395170..396318(+) (rapC) [Bacillus velezensis strain K26]
MKSGLIPSSAVGQKINEWYRYIRTFSVPDAEILKAEIKQELDRMEPDSNLVLYYSLMEFRHQLMLDYLEPLEKLKIEDQP
TLSEILDNIDNSQAGLKGLLDYYVNFFKGMFEFDKREFISAITYYKQAEKKLAFVSDHVERAEFYFKVAEAYYHMKQTYF
SLIHIKNAYEIYVEQDTYNVRIIQCHFVFGVNLMDERRFEQAAKHFQHALQMAEKEQKAQLVGRALYNLGLCYYNQDRIG
EAIPYFERAVDTFESQRIVNSLPQAYFLITLIYFKLGKKEKASEYHKRGYEYAKETDDPVYTVKFEWLQALYQAKPDEEK
ISACFRYLEDKNLYADIEDLALEAAKYYYEQNCFKISSDYFLKVEEARKQIQRSEGLYEIEI

Nucleotide

• Length: 1149 bp

>NTDB_id=244742 CK238_RS02010 WP_003156336.1 395170..396318(+) (rapC) [Bacillus velezensis strain K26]
ATGAAGAGCGGGTTAATTCCTTCTTCAGCAGTCGGGCAGAAAATTAACGAGTGGTATCGATACATCAGAACATTCAGCGT
GCCGGATGCGGAGATCTTGAAAGCCGAGATCAAACAAGAGCTTGACCGTATGGAGCCTGATTCAAACTTAGTGCTTTATT
ATTCCCTCATGGAATTTCGCCATCAGCTGATGCTGGACTACTTGGAGCCGCTGGAAAAACTGAAGATAGAAGACCAGCCG
ACCCTGTCGGAAATTCTTGATAACATTGATAACAGCCAGGCCGGCCTCAAAGGGCTTCTCGATTATTACGTCAACTTTTT
CAAAGGCATGTTTGAATTTGATAAAAGAGAATTTATCTCAGCGATTACGTATTATAAACAAGCTGAGAAAAAACTGGCCT
TCGTATCGGACCACGTGGAACGGGCGGAGTTTTATTTTAAAGTGGCCGAAGCTTATTATCATATGAAACAAACGTATTTT
TCTTTGATACATATAAAAAACGCTTATGAAATTTACGTAGAGCAGGACACATATAACGTCCGGATCATTCAATGCCATTT
TGTATTCGGCGTCAATTTAATGGATGAAAGGCGCTTTGAACAGGCGGCCAAACATTTTCAGCACGCTCTGCAAATGGCCG
AAAAAGAACAAAAAGCGCAGCTTGTCGGGAGGGCGCTGTATAACCTCGGACTGTGCTACTACAATCAGGACCGCATCGGC
GAAGCGATTCCGTACTTTGAACGGGCGGTTGATACATTTGAATCACAAAGAATCGTCAATTCTCTTCCTCAAGCATATTT
TCTAATCACACTCATTTACTTTAAACTCGGAAAAAAAGAAAAAGCGTCGGAATATCACAAGCGGGGATATGAATATGCTA
AAGAAACAGACGATCCCGTTTACACGGTAAAATTCGAATGGCTGCAGGCTCTGTATCAGGCGAAACCGGACGAGGAAAAA
ATCAGCGCATGTTTCCGTTACCTGGAAGATAAAAATTTATACGCCGATATAGAGGATTTAGCACTAGAAGCAGCTAAATA
TTACTATGAACAAAATTGCTTTAAGATTTCTTCTGACTATTTTCTGAAAGTCGAAGAGGCAAGGAAACAAATACAAAGGA
GTGAGGGTTTGTATGAAATTGAAATCTAA

Domains

Predicted by InterproScan.

• Tetratricopeptide repeat (TPR_12) (223-294)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (6-66)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	82.199	100	0.822
rapF	Bacillus subtilis subsp. subtilis str. 168	57.105	99.476	0.568