Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilF   Type   Machinery gene
Locus tag   CJD39_RS07500 Genome accession   NZ_CP023057
Coordinates   1584848..1585423 (-) Length   191 a.a.
NCBI ID   WP_111749325.1    Uniprot ID   -
Organism   Glaesserella sp. 15-184     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1579848..1590423
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CJD39_RS07470 (CJD39_07405) - 1580544..1581194 (+) 651 WP_111749331.1 ABC transporter ATP-binding protein -
  CJD39_RS07475 (CJD39_07410) - 1581273..1581458 (-) 186 WP_111749330.1 Trm112 family protein -
  CJD39_RS07480 (CJD39_07415) lpxK 1581439..1582440 (-) 1002 WP_111749329.1 tetraacyldisaccharide 4'-kinase -
  CJD39_RS07485 (CJD39_07420) clpX 1582529..1583782 (-) 1254 WP_111749328.1 ATP-dependent protease ATP-binding subunit ClpX -
  CJD39_RS07490 (CJD39_07425) clpP 1583782..1584372 (-) 591 WP_111749327.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP -
  CJD39_RS07495 (CJD39_07430) - 1584460..1584855 (+) 396 WP_111749326.1 SufE family protein -
  CJD39_RS07500 (CJD39_07435) pilF 1584848..1585423 (-) 576 WP_111749325.1 type IV pilus biogenesis/stability protein PilW Machinery gene
  CJD39_RS07505 (CJD39_07440) tnpA 1585481..1585936 (-) 456 WP_111749324.1 IS200/IS605 family transposase -
  CJD39_RS07510 (CJD39_07445) - 1586107..1587267 (-) 1161 WP_111749323.1 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN -
  CJD39_RS07535 (CJD39_07470) gltX 1588140..1589579 (+) 1440 WP_111749322.1 glutamate--tRNA ligase -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21887.69 Da        Isoelectric Point: 7.7784

>NTDB_id=244645 CJD39_RS07500 WP_111749325.1 1584848..1585423(-) (pilF) [Glaesserella sp. 15-184]
MNFAKFLPKLTAFSLVLWLTACQAPTEQTTFNRSEAVKARINLALAYLEQSDFPKAKENIDKALEHDNKDYLPHSVLAYY
YQQIGDYSKAEHTYQQAIELSKPHSKNAQARPDVLNNYGTFLCKQKQFDKAYQQFDTALTSQESYYNQADTLENVALCAN
MAKDLAKQNKAVDDLAKLDQSRAEKLRQLFK

Nucleotide


Download         Length: 576 bp        

>NTDB_id=244645 CJD39_RS07500 WP_111749325.1 1584848..1585423(-) (pilF) [Glaesserella sp. 15-184]
ATGAATTTTGCAAAATTTCTCCCCAAACTAACCGCTTTTAGCCTTGTTTTATGGCTCACAGCCTGCCAAGCCCCAACGGA
ACAGACCACTTTCAATCGTTCAGAAGCAGTTAAAGCTCGTATCAATTTAGCCCTTGCCTATCTTGAACAGTCTGATTTTC
CTAAAGCGAAAGAGAATATCGACAAAGCCCTTGAACACGATAATAAGGATTACCTACCACATTCTGTCCTTGCCTATTAT
TACCAACAAATTGGTGATTATTCAAAAGCAGAGCATACCTATCAACAAGCGATCGAACTGAGCAAACCCCACAGTAAAAA
TGCACAAGCTCGTCCAGATGTTCTCAATAACTACGGCACGTTTTTATGTAAGCAAAAGCAGTTTGATAAAGCCTACCAGC
AATTTGATACCGCATTGACGAGCCAAGAAAGCTATTATAATCAAGCAGATACTTTAGAAAATGTAGCATTGTGCGCCAAT
ATGGCAAAAGATTTAGCTAAGCAGAATAAAGCGGTAGATGACTTGGCGAAGTTAGATCAATCCAGAGCTGAGAAACTTCG
CCAGTTATTTAAATAG

Domains

Predicted by InterproScan.

Tetratricopeptide repeat (TPR_8)

(77-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilF Glaesserella parasuis strain SC1401

77.419

97.382

0.754
  pilF/pilF2 Haemophilus influenzae Rd KW20

42.541

94.764

0.403

Multiple sequence alignment