Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   CK207_RS05660 Genome accession   NZ_CP023054
Coordinates   1194989..1196395 (+) Length   468 a.a.
NCBI ID   WP_026028983.1    Uniprot ID   -
Organism   Vibrio anguillarum strain VIB43     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1189989..1201395
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CK207_RS05640 (CK207_05640) - 1190294..1190962 (-) 669 WP_019282887.1 SDR family oxidoreductase -
  CK207_RS05645 (CK207_05645) - 1191082..1192014 (+) 933 WP_019282888.1 LysR family transcriptional regulator -
  CK207_RS05655 (CK207_05655) uvrB 1192717..1194747 (+) 2031 WP_029189720.1 excinuclease ABC subunit UvrB -
  CK207_RS05660 (CK207_05660) luxO 1194989..1196395 (+) 1407 WP_026028983.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  CK207_RS05665 (CK207_05665) luxU 1196398..1196736 (+) 339 WP_013857261.1 quorum-sensing phosphorelay protein LuxU -
  CK207_RS05670 (CK207_05670) - 1196733..1197623 (-) 891 WP_013857260.1 YvcK family protein -
  CK207_RS05675 (CK207_05675) moaA 1197934..1198923 (+) 990 WP_026028246.1 GTP 3',8-cyclase MoaA -
  CK207_RS05680 (CK207_05680) moaB 1198991..1199503 (+) 513 WP_010320682.1 molybdenum cofactor biosynthesis protein B -
  CK207_RS05685 (CK207_05685) moaC 1199514..1200014 (+) 501 WP_010320681.1 cyclic pyranopterin monophosphate synthase MoaC -
  CK207_RS05690 (CK207_05690) moaD 1200007..1200252 (+) 246 WP_010320680.1 molybdopterin synthase sulfur carrier subunit -
  CK207_RS05695 (CK207_05695) moaE 1200252..1200725 (+) 474 WP_019282889.1 molybdopterin synthase catalytic subunit MoaE -

Sequence

Protein


Download         Length: 468 a.a.        Molecular weight: 52158.56 Da        Isoelectric Point: 6.0312

>NTDB_id=244605 CK207_RS05660 WP_026028983.1 1194989..1196395(+) (luxO) [Vibrio anguillarum strain VIB43]
MQPDFSLQKAKYLLMVEDTASVAALYRSYLTPLEIDINIVGTGRDAIESLAHREPDLILLDLRLPDMTGMDVLHAVKSHY
PNVPVIFMTAHGSIDTAVEAMRHGAQDFLIKPCEADRLRVTVNNAIRKASKLKNEAGNPGNQNYQGFIGSSQTMQSVYRT
IDSAASSKASIFITGESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATDRQGAAELADG
GTLFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRE
RGDDVIEIAYSLLGFMSKEEGKGFVRLAPEVVERFTRYEWPGNVRQLQNVLRNVVVLNHGNEIELSMLPPPLNQVVDNKI
RLANLTTETRKENITVHDIFPLWMTEKQAIEQAIEACDGNIPKAASYLDVSPSTIYRKLQAWNSRENS

Nucleotide


Download         Length: 1407 bp        

>NTDB_id=244605 CK207_RS05660 WP_026028983.1 1194989..1196395(+) (luxO) [Vibrio anguillarum strain VIB43]
ATGCAACCTGACTTTTCTCTACAAAAGGCTAAATATCTTTTGATGGTGGAAGATACGGCTTCCGTTGCGGCGCTGTATCG
TTCATACCTCACCCCCCTTGAAATCGATATCAATATTGTTGGTACAGGTCGTGATGCGATAGAGAGTTTAGCTCACCGAG
AGCCGGACCTCATATTGCTGGATCTTCGATTACCCGATATGACGGGCATGGACGTTTTACATGCTGTGAAAAGTCACTAC
CCCAATGTGCCAGTGATATTCATGACCGCTCATGGTTCGATCGATACCGCAGTGGAAGCGATGCGTCACGGTGCCCAAGA
TTTCTTGATCAAACCTTGTGAAGCAGACCGCTTGCGCGTCACGGTTAACAACGCCATACGTAAAGCTAGCAAACTAAAAA
ATGAGGCTGGTAACCCGGGTAATCAGAACTACCAAGGTTTTATCGGCAGCAGTCAAACCATGCAATCAGTCTATCGAACC
ATTGACTCAGCGGCCTCCAGTAAAGCCAGTATTTTTATTACTGGCGAAAGTGGTACGGGTAAAGAGGTGTGCGCAGAAGC
GATTCATGCGGCCAGTAAACGTGGCGATAAACCCTTCATTGCGATTAACTGCGCCGCCATTCCTAAAGACTTAATAGAGA
GTGAACTCTTTGGCCACGTGAAAGGCGCATTTACTGGCGCAGCGACCGATCGCCAAGGCGCAGCCGAGTTGGCTGATGGT
GGCACACTGTTTTTGGATGAACTGTGTGAAATGGATTTGGATTTGCAGACCAAGCTGTTGCGCTTTATCCAAACGGGCAC
ATTCCAGAAAGTGGGCTCATCGAAGATGAAAAGTGTCGATGTTCGTTTTGTCTGCGCTACCAACCGCGATCCTTGGAAAG
AAGTGCAAGAGGGGCGTTTTCGTGAAGATTTGTACTATCGTCTTTATGTGATCCCATTGCATTTACCACCGCTACGCGAG
CGAGGCGATGACGTTATTGAAATTGCTTACTCTTTGCTCGGCTTTATGTCTAAAGAAGAAGGCAAAGGTTTTGTCCGCTT
AGCGCCAGAGGTTGTGGAGCGTTTTACGCGCTATGAATGGCCGGGTAATGTGCGTCAACTGCAAAACGTGTTGCGGAATG
TGGTGGTATTGAACCACGGTAACGAGATCGAACTGAGCATGCTACCCCCACCGCTAAATCAAGTCGTGGATAACAAAATT
CGATTAGCAAACTTAACGACGGAAACACGCAAGGAAAATATAACCGTGCACGATATTTTTCCTTTGTGGATGACGGAAAA
ACAAGCTATCGAACAAGCGATAGAAGCGTGTGATGGCAATATTCCTAAAGCAGCCAGTTATTTGGACGTTAGCCCTTCAA
CTATCTACCGCAAGCTGCAAGCGTGGAACAGTAGAGAGAACTCATAG

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(148-313)

Bacterial regulatory protein, Fis family (HTH_8)

(422-462)

Response regulator receiver domain (Response_reg)

(14-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

88.641

95.94

0.85
  pilR Pseudomonas aeruginosa PAK

38.178

98.504

0.376

Multiple sequence alignment