Detailed information
Bioinformatically predicted
Overview
| Name | xcpV | Type | Machinery gene |
| Locus tag | Aba7847_RS13410 | Genome accession | NZ_CP023031 |
| Coordinates | 2810939..2811319 (-) | Length | 126 a.a. |
| NCBI ID | WP_000836911.1 | Uniprot ID | - |
| Organism | Acinetobacter baumannii strain 7847 | ||
| Function | pseudopilus assembly (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2805939..2816319
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| Aba7847_RS13380 (Aba7847_13340) | tadA | 2806057..2806560 (-) | 504 | WP_000033178.1 | tRNA adenosine(34) deaminase TadA | - |
| Aba7847_RS13385 (Aba7847_13345) | - | 2806567..2807691 (-) | 1125 | WP_001983908.1 | enoyl-CoA hydratase/isomerase family protein | - |
| Aba7847_RS13390 (Aba7847_13350) | ung | 2807688..2808401 (-) | 714 | WP_001177528.1 | uracil-DNA glycosylase | - |
| Aba7847_RS13395 (Aba7847_13355) | - | 2808452..2809048 (-) | 597 | WP_000908452.1 | 6-pyruvoyl trahydropterin synthase family protein | - |
| Aba7847_RS13400 (Aba7847_13360) | gspK | 2809279..2810238 (-) | 960 | WP_000301476.1 | type II secretion system minor pseudopilin GspK | - |
| Aba7847_RS13405 (Aba7847_13365) | xcpW | 2810238..2810939 (-) | 702 | WP_000594589.1 | type II secretion system minor pseudopilin GspJ | Machinery gene |
| Aba7847_RS13410 (Aba7847_13370) | xcpV | 2810939..2811319 (-) | 381 | WP_000836911.1 | type II secretion system minor pseudopilin GspI | Machinery gene |
| Aba7847_RS13415 (Aba7847_13375) | - | 2811309..2811863 (-) | 555 | WP_000841373.1 | type II secretion system protein | - |
| Aba7847_RS13420 (Aba7847_13380) | - | 2811873..2812481 (-) | 609 | WP_000375838.1 | TetR/AcrR family transcriptional regulator | - |
| Aba7847_RS13425 (Aba7847_13385) | - | 2812519..2813292 (-) | 774 | WP_000497298.1 | TatD family hydrolase | - |
| Aba7847_RS13430 (Aba7847_13390) | - | 2813310..2813651 (-) | 342 | WP_001183024.1 | PilZ domain-containing protein | - |
| Aba7847_RS13435 (Aba7847_13395) | - | 2813663..2814643 (-) | 981 | WP_001075411.1 | DNA polymerase III subunit delta' | - |
| Aba7847_RS13440 (Aba7847_13400) | kdsB | 2814655..2815416 (-) | 762 | WP_000680697.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | - |
Sequence
Protein
Download Length: 126 a.a. Molecular weight: 13975.20 Da Isoelectric Point: 9.8004
>NTDB_id=244333 Aba7847_RS13410 WP_000836911.1 2810939..2811319(-) (xcpV) [Acinetobacter baumannii strain 7847]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
Nucleotide
Download Length: 381 bp
>NTDB_id=244333 Aba7847_RS13410 WP_000836911.1 2810939..2811319(-) (xcpV) [Acinetobacter baumannii strain 7847]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| xcpV | Acinetobacter baumannii D1279779 |
100 |
100 |
1 |