Detailed information
Bioinformatically predicted
Overview
| Name | xcpV | Type | Machinery gene |
| Locus tag | Aba10042_RS10040 | Genome accession | NZ_CP023026 |
| Coordinates | 2071695..2072075 (-) | Length | 126 a.a. |
| NCBI ID | WP_000836911.1 | Uniprot ID | - |
| Organism | Acinetobacter baumannii strain 10042 | ||
| Function | pseudopilus assembly (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2066695..2077075
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| Aba10042_RS10010 (Aba10042_09960) | tadA | 2066813..2067316 (-) | 504 | WP_000033178.1 | tRNA adenosine(34) deaminase TadA | - |
| Aba10042_RS10015 (Aba10042_09965) | - | 2067323..2068447 (-) | 1125 | WP_001983908.1 | enoyl-CoA hydratase/isomerase family protein | - |
| Aba10042_RS10020 (Aba10042_09970) | ung | 2068444..2069157 (-) | 714 | WP_001177528.1 | uracil-DNA glycosylase | - |
| Aba10042_RS10025 (Aba10042_09975) | - | 2069208..2069804 (-) | 597 | WP_000908452.1 | 6-pyruvoyl trahydropterin synthase family protein | - |
| Aba10042_RS10030 (Aba10042_09980) | gspK | 2070035..2070994 (-) | 960 | WP_000301476.1 | type II secretion system minor pseudopilin GspK | - |
| Aba10042_RS10035 (Aba10042_09985) | xcpW | 2070994..2071695 (-) | 702 | WP_000594589.1 | type II secretion system minor pseudopilin GspJ | Machinery gene |
| Aba10042_RS10040 (Aba10042_09990) | xcpV | 2071695..2072075 (-) | 381 | WP_000836911.1 | type II secretion system minor pseudopilin GspI | Machinery gene |
| Aba10042_RS10045 (Aba10042_09995) | - | 2072065..2072619 (-) | 555 | WP_000841373.1 | type II secretion system protein | - |
| Aba10042_RS10050 (Aba10042_10000) | - | 2072629..2073237 (-) | 609 | WP_000375838.1 | TetR/AcrR family transcriptional regulator | - |
| Aba10042_RS10055 (Aba10042_10005) | - | 2073275..2074048 (-) | 774 | WP_000497298.1 | TatD family hydrolase | - |
| Aba10042_RS10060 (Aba10042_10010) | - | 2074066..2074407 (-) | 342 | WP_001183024.1 | PilZ domain-containing protein | - |
| Aba10042_RS10065 (Aba10042_10015) | - | 2074419..2075399 (-) | 981 | WP_001075411.1 | DNA polymerase III subunit delta' | - |
| Aba10042_RS10070 (Aba10042_10020) | kdsB | 2075411..2076172 (-) | 762 | WP_000680697.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | - |
Sequence
Protein
Download Length: 126 a.a. Molecular weight: 13975.20 Da Isoelectric Point: 9.8004
>NTDB_id=244223 Aba10042_RS10040 WP_000836911.1 2071695..2072075(-) (xcpV) [Acinetobacter baumannii strain 10042]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
Nucleotide
Download Length: 381 bp
>NTDB_id=244223 Aba10042_RS10040 WP_000836911.1 2071695..2072075(-) (xcpV) [Acinetobacter baumannii strain 10042]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| xcpV | Acinetobacter baumannii D1279779 |
100 |
100 |
1 |