Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   Aba10324_RS09375 Genome accession   NZ_CP023022
Coordinates   1929644..1930117 (-) Length   157 a.a.
NCBI ID   WP_001214068.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain 10324     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1924644..1935117
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Aba10324_RS09340 (Aba10324_09345) rplS 1925243..1925611 (-) 369 WP_000014562.1 50S ribosomal protein L19 -
  Aba10324_RS09345 (Aba10324_09350) trmD 1925819..1926559 (-) 741 WP_000464598.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  Aba10324_RS09350 (Aba10324_09355) rimM 1926605..1927153 (-) 549 WP_000189236.1 ribosome maturation factor RimM -
  Aba10324_RS09355 (Aba10324_09360) rpsP 1927173..1927424 (-) 252 WP_000260334.1 30S ribosomal protein S16 -
  Aba10324_RS19395 (Aba10324_09365) - 1927571..1927900 (-) 330 Protein_1828 type IV pilin protein -
  Aba10324_RS19425 - 1927870..1928091 (-) 222 Protein_1829 PilX N-terminal domain-containing pilus assembly protein -
  Aba10324_RS09365 (Aba10324_09370) pilW 1928088..1929089 (-) 1002 WP_000079199.1 PilW family protein Machinery gene
  Aba10324_RS09370 (Aba10324_09375) pilV 1929090..1929650 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  Aba10324_RS09375 (Aba10324_09380) fimU 1929644..1930117 (-) 474 WP_001214068.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  Aba10324_RS09380 (Aba10324_09385) ispH 1930287..1931237 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  Aba10324_RS09385 (Aba10324_09390) gmk 1931360..1931989 (+) 630 WP_000015936.1 guanylate kinase -
  Aba10324_RS09390 (Aba10324_09395) rpoZ 1932062..1932340 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  Aba10324_RS09395 - 1932379..1932509 (+) 131 Protein_1836 hypothetical protein -
  Aba10324_RS09400 (Aba10324_09400) - 1932549..1934654 (+) 2106 WP_020753492.1 RelA/SpoT family protein -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16851.46 Da        Isoelectric Point: 8.5355

>NTDB_id=244168 Aba10324_RS09375 WP_001214068.1 1929644..1930117(-) (fimU) [Acinetobacter baumannii strain 10324]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLEANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWQTASNNTLELKNIAADGTQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKVIILTKLGTLVFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=244168 Aba10324_RS09375 WP_001214068.1 1929644..1930117(-) (fimU) [Acinetobacter baumannii strain 10324]
ATGAGGGGAATTATTCCGCAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATTGCACT
GATGGCTGCGCCATCAATGTCAAATTTATTAGAAAGTAAACGTTTAGAGGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGACGTCAGAATGTTTCTGTTAACTTGAATTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGCAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGACGGTACGCAAAGTTCTTTAAC
GACTACCACTTTAGCTTTTAACGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTCTA
GAATAAATAAAAAGAAAGTTATTATTTTGACCAAGCTTGGCACTTTAGTTTTTAAGGCCGAGGAGACTTGTTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(47-143)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

99.363

100

0.994

Multiple sequence alignment