Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   Aba9201_RS15345 Genome accession   NZ_CP023020
Coordinates   3130507..3131325 (+) Length   272 a.a.
NCBI ID   WP_000149377.1    Uniprot ID   A0A009ITJ0
Organism   Acinetobacter baumannii strain 9201     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3125507..3136325
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Aba9201_RS15310 - 3126089..3126219 (-) 131 Protein_2967 hypothetical protein -
  Aba9201_RS15315 (Aba9201_15295) rpoZ 3126258..3126536 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  Aba9201_RS15320 (Aba9201_15300) gmk 3126609..3127238 (-) 630 WP_000015937.1 guanylate kinase -
  Aba9201_RS15325 (Aba9201_15305) ispH 3127361..3128311 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  Aba9201_RS15330 (Aba9201_15310) fimU 3128481..3128954 (+) 474 WP_001214057.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  Aba9201_RS15335 (Aba9201_15315) pilV 3128948..3129508 (+) 561 WP_100222559.1 type IV pilus modification protein PilV Machinery gene
  Aba9201_RS15340 (Aba9201_15320) pilW 3129509..3130510 (+) 1002 WP_000079202.1 PilW family protein Machinery gene
  Aba9201_RS15345 (Aba9201_15325) pilX 3130507..3131325 (+) 819 WP_000149377.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  Aba9201_RS15350 (Aba9201_15330) pilY1 3131337..3135191 (+) 3855 WP_000768952.1 PilC/PilY family type IV pilus protein Machinery gene
  Aba9201_RS15355 (Aba9201_15335) pilY2 3135204..3135686 (+) 483 WP_001046422.1 type IV pilin protein Machinery gene
  Aba9201_RS15360 (Aba9201_15340) pilE 3135683..3136108 (+) 426 WP_000788343.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28858.70 Da        Isoelectric Point: 5.6905

>NTDB_id=244144 Aba9201_RS15345 WP_000149377.1 3130507..3131325(+) (pilX) [Acinetobacter baumannii strain 9201]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMPDIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=244144 Aba9201_RS15345 WP_000149377.1 3130507..3131325(+) (pilX) [Acinetobacter baumannii strain 9201]
ATGACCCATTTAAATTATAAAAATATCAAAGGTCGATCTAAGGAAACAGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATCGTTATCTCTGTAGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGTGCAGCACTTAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACCTCGAC
ATCTGTAAGTTTTGCTCAAACTCGGGGAGCAAGTTTGCTTCGGGCTGGCAGCGCCAATAATGCTGTGGTTGAAGACGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGCCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGTATGCTATCTACGCAACGTATTCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCATCAACCTCTTTAGAAACTT
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACCCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009ITJ0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

98.897

100

0.989

Multiple sequence alignment