Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   SH_RS01870 Genome accession   NC_007168
Coordinates   418723..419391 (+) Length   222 a.a.
NCBI ID   WP_011274730.1    Uniprot ID   -
Organism   Staphylococcus haemolyticus JCSC1435     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 413723..424391
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SH_RS01855 (SH0399) - 414120..415253 (+) 1134 WP_011274725.1 DegT/DnrJ/EryC1/StrS family aminotransferase -
  SH_RS01860 (SH0400) - 415274..416209 (+) 936 WP_041615072.1 LCP family protein -
  SH_RS01865 (SH0401) - 416299..417774 (-) 1476 WP_011274727.1 alkaline phosphatase -
  SH_RS13740 (SH0402) - 418173..418343 (+) 171 WP_011274728.1 hypothetical protein -
  SH_RS13745 (SH0403) - 418529..418693 (+) 165 WP_011274729.1 hypothetical protein -
  SH_RS01870 (SH0404) braR 418723..419391 (+) 669 WP_011274730.1 response regulator transcription factor Regulator
  SH_RS01875 (SH0405) braS 419394..420290 (+) 897 WP_011274731.1 sensor histidine kinase Regulator
  SH_RS01880 (SH0406) - 420472..421221 (+) 750 WP_011274732.1 ABC transporter ATP-binding protein -
  SH_RS01885 (SH0407) - 421223..423214 (+) 1992 WP_011274733.1 ABC transporter permease -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25658.44 Da        Isoelectric Point: 4.5713

>NTDB_id=24394 SH_RS01870 WP_011274730.1 418723..419391(+) (braR) [Staphylococcus haemolyticus JCSC1435]
MKVFIVEDDFVIAESLEQELSKWNYEVIVAKQFDNIIDVFNANQPQLVLLDINLPTFNGYHWCQEIRKTSNVPIMFISSR
TDNMDQIMAIQMGGDDFIEKPFNLSLTVTKIQALLRRTYDLAVSNNEVTVKNCKLVVDEATLYHEDESVQLSFTELQILN
MLFRNEGKYVSRTALIEKCWESENFIDDNTLAVNMTRLRKKLQSIGVVDLIETKKNVGYKVS

Nucleotide


Download         Length: 669 bp        

>NTDB_id=24394 SH_RS01870 WP_011274730.1 418723..419391(+) (braR) [Staphylococcus haemolyticus JCSC1435]
ATGAAAGTATTCATCGTGGAAGATGATTTTGTCATTGCAGAAAGTTTAGAGCAAGAGTTATCGAAATGGAATTATGAGGT
CATCGTGGCTAAACAATTTGATAATATTATCGACGTATTTAATGCAAATCAACCACAACTCGTGTTGCTCGATATCAATC
TACCGACGTTCAATGGTTATCACTGGTGTCAGGAGATACGTAAGACTTCTAATGTGCCGATTATGTTTATTAGTTCAAGA
ACCGACAATATGGATCAAATTATGGCGATTCAAATGGGCGGCGATGATTTTATCGAGAAACCATTTAATTTATCGTTAAC
GGTAACTAAGATTCAAGCACTATTACGTAGAACGTATGATTTAGCAGTGTCTAATAATGAAGTTACTGTTAAAAATTGCA
AACTTGTTGTAGATGAAGCAACACTTTACCATGAAGACGAATCGGTTCAATTGTCTTTTACTGAATTACAAATCTTAAAT
ATGTTGTTCCGCAATGAAGGTAAGTATGTCAGCCGTACCGCATTGATTGAGAAGTGTTGGGAGTCTGAGAATTTTATAGA
TGACAATACTTTAGCGGTCAATATGACACGATTGCGTAAGAAATTACAATCGATAGGTGTTGTAGATTTAATTGAAACTA
AGAAGAATGTGGGATATAAGGTGTCTTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(3-111)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(147-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

78.281

99.55

0.779

Multiple sequence alignment