Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LCAKO_RS00050 Genome accession   NZ_CP022954
Coordinates   11614..12210 (+) Length   198 a.a.
NCBI ID   WP_003568462.1    Uniprot ID   A0A0C9PXZ6
Organism   Lacticaseibacillus paracasei subsp. paracasei strain IBB3423     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6614..17210
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LCAKO_RS00030 (LCAKO_0008) gyrA 7115..9736 (+) 2622 WP_003603997.1 DNA gyrase subunit A -
  LCAKO_RS00035 (LCAKO_0009) deoC 9841..10545 (-) 705 WP_003568456.1 deoxyribose-phosphate aldolase -
  LCAKO_RS00040 (LCAKO_0010) ssb 10728..11159 (+) 432 WP_003568458.1 single-stranded DNA-binding protein -
  LCAKO_RS00045 (LCAKO_0011) rpsF 11287..11583 (+) 297 WP_003568460.1 30S ribosomal protein S6 -
  LCAKO_RS00050 (LCAKO_0012) ssb 11614..12210 (+) 597 WP_003568462.1 single-stranded DNA-binding protein Machinery gene
  LCAKO_RS00055 (LCAKO_0013) rpsR 12297..12533 (+) 237 WP_003568467.1 30S ribosomal protein S18 -
  LCAKO_RS00060 (LCAKO_0014) - 12975..14453 (+) 1479 WP_003568469.1 cytochrome ubiquinol oxidase subunit I -
  LCAKO_RS00065 (LCAKO_0015) cydB 14446..15465 (+) 1020 WP_003568540.1 cytochrome d ubiquinol oxidase subunit II -
  LCAKO_RS00070 (LCAKO_0016) - 15492..15686 (+) 195 WP_003568474.1 hypothetical protein -
  LCAKO_RS00075 (LCAKO_0017) - 15759..16352 (-) 594 WP_003581645.1 TMEM175 family protein -
  LCAKO_RS00080 (LCAKO_0018) - 16746..17141 (-) 396 WP_003584064.1 hypothetical protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21138.87 Da        Isoelectric Point: 4.9056

>NTDB_id=243667 LCAKO_RS00050 WP_003568462.1 11614..12210(+) (ssb) [Lacticaseibacillus paracasei subsp. paracasei strain IBB3423]
MLNSVALTGRLTRDVDLRYTQSGTAVGSFTLAVDRQFRSANGERETDFINCVIWRKSAENFANFTKKGSMVGVEGHIQTR
TYDNAQGQKVYVTEVVVENFALLESRATTQQRPSEPANPAGQGNQNYGGGQQFGNNQPQNPPSFGSQGAPNNASSSNPGQ
NPAASQNQGGNSAANPANPDPFANNGKPIDISDDDLPF

Nucleotide


Download         Length: 597 bp        

>NTDB_id=243667 LCAKO_RS00050 WP_003568462.1 11614..12210(+) (ssb) [Lacticaseibacillus paracasei subsp. paracasei strain IBB3423]
ATGCTTAACAGTGTTGCATTGACAGGTCGATTAACCAGAGACGTTGATTTGCGTTACACGCAAAGTGGCACGGCTGTCGG
TTCTTTCACGCTGGCCGTTGACCGCCAGTTCCGCAGTGCAAACGGCGAACGTGAAACTGACTTCATCAATTGTGTGATCT
GGCGTAAGTCTGCAGAGAACTTTGCAAACTTCACCAAAAAGGGATCTATGGTTGGAGTTGAAGGCCATATCCAAACGCGT
ACGTATGATAACGCGCAAGGACAAAAGGTCTACGTGACCGAAGTCGTCGTTGAAAACTTTGCGTTGCTGGAATCCCGGGC
AACGACTCAACAGCGGCCGTCCGAACCGGCAAATCCAGCTGGCCAAGGTAATCAGAACTATGGCGGCGGGCAGCAGTTTG
GCAATAACCAACCGCAGAATCCGCCAAGTTTTGGTTCACAAGGCGCCCCGAACAATGCATCATCATCGAATCCGGGTCAA
AATCCGGCAGCAAGTCAGAACCAAGGAGGCAACTCCGCGGCTAACCCTGCTAATCCCGATCCGTTTGCTAATAATGGCAA
GCCGATCGACATTTCCGATGATGATTTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0C9PXZ6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

59.296

100

0.596
  ssbA Bacillus subtilis subsp. subtilis str. 168

48.485

100

0.485

Multiple sequence alignment