Detailed information NTG0024312

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: STU_RS18850
• Genome accession: NC_006448
• Coordinates: 1781957..1783057 (+)
• Length: 366 a.a.
• NCBI ID: WP_011226706.1
• Uniprot ID: Q5M237
• Organism: Streptococcus thermophilus LMG 18311
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1776957..1788057

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
STU_RS18825 (stu2010)	pgsA	1777499..1778041 (-)	543	WP_002947777.1	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-
STU_RS18830 (stu2011)	-	1778054..1778911 (-)	858	WP_011226703.1	helix-turn-helix domain-containing protein	-
STU_RS18835 (stu2012)	yfmH	1778970..1780247 (-)	1278	WP_011226704.1	EF-P 5-aminopentanol modification-associated protein YfmH	-
STU_RS18840 (stu2013)	yfmF	1780249..1781499 (-)	1251	WP_011226705.1	EF-P 5-aminopentanol modification-associated protein YfmF	-
STU_RS18845 (stu2014)	yaaA	1781577..1781954 (+)	378	WP_002947785.1	S4 domain-containing protein YaaA	-
STU_RS18850 (stu2015)	recF	1781957..1783057 (+)	1101	WP_011226706.1	DNA replication/repair protein RecF	Machinery gene
STU_RS18855 (stu2016)	guaB	1783226..1784707 (-)	1482	WP_011226707.1	IMP dehydrogenase	-
STU_RS18860 (stu2017)	-	1785106..1786059 (+)	954	WP_041826943.1	IS30 family transposase	-
STU_RS18865 (stu2018)	trpS	1786129..1787151 (-)	1023	WP_002952292.1	tryptophan--tRNA ligase	-

Sequence

Protein

• Length: 366 a.a.
• Molecular weight: 42185.34 Da
• Isoelectric Point: 8.3913

>NTDB_id=24312 STU_RS18850 WP_011226706.1 1781957..1783057(+) (recF) [Streptococcus thermophilus LMG 18311]
MWLEKIDIQHFRNYSEASVSFSPHLNIFLGRNAQGKTNILEAIYFLALTRSHRTHLDKELIQFQQNSLKLNGIVHRHSGN
LPLEINLSNKGRVTKVNYLKQAKLSDYIGHMTVVLFAPEDLQLVKGSPSLRRKFIDIDLGQIKPVYLSDLSNYNHVLKQR
NAYLKSTDKVDINFLSVLDEQLADFGARVIKHRLEFIKQLEEEADGHHSILSNQIERLKISYESNIPIQNSKDIREAFLT
ILNQNHKRDIFKKNTGVGPHRDDLKFYINDMNASFGSQGQQRSLILSLKMAEIALIKKVTEEFPILLLDDVMSELDNHRQ
LKLLESIDEEVQTFMTTTSLDHLSNLPPNLKTFLVKNGTIYEKQVD

Nucleotide

• Length: 1101 bp

>NTDB_id=24312 STU_RS18850 WP_011226706.1 1781957..1783057(+) (recF) [Streptococcus thermophilus LMG 18311]
ATGTGGCTTGAAAAAATTGATATTCAACACTTTAGAAATTATTCTGAAGCCTCTGTGAGCTTTTCACCACATCTCAATAT
TTTTCTTGGACGAAATGCCCAAGGAAAAACAAATATTCTTGAAGCTATCTATTTTCTAGCCTTAACACGTAGTCATCGGA
CCCATTTAGACAAGGAACTAATTCAGTTCCAGCAAAATAGTCTTAAACTAAACGGCATCGTGCACCGTCATAGTGGAAAC
CTACCTCTGGAAATCAACTTATCTAATAAGGGACGAGTTACAAAGGTCAACTACCTCAAGCAGGCAAAATTATCTGATTA
TATAGGTCACATGACGGTGGTACTCTTTGCTCCTGAGGATTTACAACTTGTAAAAGGATCTCCAAGTCTAAGACGTAAAT
TTATAGATATTGATTTAGGACAGATTAAGCCTGTTTACCTCTCAGACCTATCAAATTACAATCATGTTCTTAAGCAGCGT
AATGCCTATCTCAAATCTACTGACAAGGTAGACATTAATTTCCTCTCAGTTTTAGATGAACAGCTTGCCGATTTTGGAGC
ACGAGTTATTAAACATAGACTAGAATTTATCAAGCAATTAGAAGAGGAAGCTGATGGACATCATAGTATTCTCTCAAATC
AGATTGAGCGTCTTAAAATTTCCTATGAATCTAACATCCCAATACAAAATAGCAAAGATATTCGAGAAGCATTTTTAACT
ATATTAAACCAGAATCACAAAAGAGATATCTTCAAAAAGAATACCGGTGTTGGTCCACATAGGGATGATTTAAAATTTTA
CATTAATGACATGAACGCATCTTTCGGTAGTCAAGGGCAGCAACGTAGCCTTATTCTTTCATTAAAAATGGCTGAGATTG
CTCTAATTAAAAAAGTGACGGAGGAATTTCCTATTCTTCTCCTTGACGATGTCATGAGTGAACTTGACAATCACCGTCAA
CTTAAATTGCTAGAAAGTATTGATGAAGAGGTCCAAACTTTCATGACTACAACCTCACTCGATCATCTTAGCAACCTACC
ACCCAATTTAAAGACCTTCTTAGTTAAGAATGGTACTATTTATGAAAAGCAAGTCGATTAA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (3-358)

3D structure

• AlphaFold DB: Q5M237

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Streptococcus pneumoniae R6	65.642	97.814	0.642
recF	Bacillus subtilis subsp. subtilis str. 168	42.935	100	0.432