Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CGP96_RS11065 Genome accession   NZ_CP022900
Coordinates   2168929..2169324 (-) Length   131 a.a.
NCBI ID   WP_000932696.1    Uniprot ID   A0A166JXQ7
Organism   Staphylococcus aureus strain 468     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2163929..2174324
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CGP96_RS11035 (CGP96_02034) thiE 2164390..2165031 (-) 642 WP_000483150.1 thiamine phosphate synthase -
  CGP96_RS11040 (CGP96_02035) thiM 2165033..2165824 (-) 792 WP_001108496.1 hydroxyethylthiazole kinase -
  CGP96_RS11045 (CGP96_02036) thiD 2165808..2166638 (-) 831 WP_000594963.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  CGP96_RS11050 (CGP96_02037) tenA 2166631..2167320 (-) 690 WP_000396068.1 thiaminase II -
  CGP96_RS11060 (CGP96_02039) sceD 2167845..2168540 (-) 696 WP_115283875.1 lytic transglycosylase SceD -
  CGP96_RS11065 (CGP96_02040) ssb 2168929..2169324 (-) 396 WP_000932696.1 single-stranded DNA-binding protein Machinery gene
  CGP96_RS11070 (CGP96_02041) - 2169518..2169958 (+) 441 WP_000846746.1 YwpF-like family protein -
  CGP96_RS11075 (CGP96_02042) fabZ 2170015..2170455 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  CGP96_RS11080 (CGP96_02043) murA 2170489..2171754 (-) 1266 WP_000358009.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  CGP96_RS11085 (CGP96_02044) - 2171865..2172098 (-) 234 WP_000384523.1 DUF1146 family protein -
  CGP96_RS11100 (CGP96_02045) - 2172977..2173381 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15070.11 Da        Isoelectric Point: 5.6824

>NTDB_id=243044 CGP96_RS11065 WP_000932696.1 2168929..2169324(-) (ssb) [Staphylococcus aureus strain 468]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIERYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=243044 CGP96_RS11065 WP_000932696.1 2168929..2169324(-) (ssb) [Staphylococcus aureus strain 468]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAGATACACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A166JXQ7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

99.237

100

0.992
  ssb Staphylococcus aureus MW2

98.473

100

0.985

Multiple sequence alignment