Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   CGP94_RS08050 Genome accession   NZ_CP022898
Coordinates   1607850..1608296 (-) Length   148 a.a.
NCBI ID   WP_072357807.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 422     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1602850..1613296
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CGP94_RS08020 (CGP94_01477) gcvPA 1603776..1605122 (-) 1347 WP_000019687.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  CGP94_RS08025 (CGP94_01478) gcvT 1605142..1606233 (-) 1092 WP_000093354.1 glycine cleavage system aminomethyltransferase GcvT -
  CGP94_RS08030 (CGP94_01479) - 1606392..1606916 (-) 525 WP_001015120.1 shikimate kinase -
  CGP94_RS08035 - 1606906..1607052 (-) 147 WP_001789879.1 hypothetical protein -
  CGP94_RS08040 (CGP94_01480) comGF 1607149..1607646 (-) 498 WP_001825340.1 competence type IV pilus minor pilin ComGF Machinery gene
  CGP94_RS08045 (CGP94_01481) comGE 1607564..1607863 (-) 300 WP_000844415.1 hypothetical protein Machinery gene
  CGP94_RS08050 (CGP94_01482) comGD 1607850..1608296 (-) 447 WP_072357807.1 competence type IV pilus minor pilin ComGD Machinery gene
  CGP94_RS08055 (CGP94_01483) comGC 1608274..1608585 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  CGP94_RS08060 (CGP94_01484) comGB 1608599..1609669 (-) 1071 WP_000776413.1 competence type IV pilus assembly protein ComGB Machinery gene
  CGP94_RS08065 (CGP94_01485) comGA 1609641..1610615 (-) 975 WP_000697222.1 competence type IV pilus ATPase ComGA Machinery gene
  CGP94_RS08070 (CGP94_01486) - 1610667..1611290 (-) 624 WP_047213494.1 MBL fold metallo-hydrolase -
  CGP94_RS08075 (CGP94_01487) - 1611287..1611616 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  CGP94_RS08080 (CGP94_01488) - 1611616..1612602 (-) 987 WP_000161315.1 ROK family glucokinase -
  CGP94_RS08085 - 1612599..1612802 (-) 204 WP_000087561.1 YqgQ family protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17165.33 Da        Isoelectric Point: 10.3312

>NTDB_id=242944 CGP94_RS08050 WP_072357807.1 1607850..1608296(-) (comGD) [Staphylococcus aureus strain 422]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISLITELNYFKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIDNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=242944 CGP94_RS08050 WP_072357807.1 1607850..1608296(-) (comGD) [Staphylococcus aureus strain 422]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTTTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTCTTA
TTACTGAATTGAATTATTTTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGCATAACAATTGACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

98.649

100

0.986
  comGD Staphylococcus aureus N315

98.649

100

0.986

Multiple sequence alignment