Detailed information    

insolico Bioinformatically predicted

Overview

Name   hapR   Type   Regulator
Locus tag   VF_RS11340 Genome accession   NC_006840
Coordinates   2446537..2447142 (+) Length   201 a.a.
NCBI ID   WP_011262617.1    Uniprot ID   Q5E2S4
Organism   Aliivibrio fischeri ES114     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2441537..2452142
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VF_RS11320 (VF2173) - 2442124..2443779 (-) 1656 WP_011262614.1 SulP family inorganic anion transporter -
  VF_RS11325 (VF2174) can 2444072..2444728 (+) 657 WP_012533718.1 carbonate dehydratase -
  VF_RS11330 (VF2175) - 2444849..2445100 (-) 252 WP_011262616.1 hypothetical protein -
  VF_RS11335 (VF2176) hpt 2445632..2446162 (-) 531 WP_005420875.1 hypoxanthine phosphoribosyltransferase -
  VF_RS11340 (VF2177) hapR 2446537..2447142 (+) 606 WP_011262617.1 TetR/AcrR family transcriptional regulator Regulator
  VF_RS11345 (VF2178) lpdA 2447230..2448657 (-) 1428 WP_005420880.1 dihydrolipoyl dehydrogenase -
  VF_RS11350 (VF2179) aceF 2448932..2450818 (-) 1887 WP_011262618.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23245.24 Da        Isoelectric Point: 4.8215

>NTDB_id=24261 VF_RS11340 WP_011262617.1 2446537..2447142(+) (hapR) [Aliivibrio fischeri ES114]
MDTIQKRPRTRLSPEKRKEQLLDIAIEVFSQRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDDVLNKVENEFHQFIN
NSISLDLDVRSNLNTLLLNIIDSVQTGNKWIKVWFEWSTSTRDEVWPLFLSTHSNTNQVIKTMFEEGIERNEVCNDHTPE
NLTKMLHGICYSVFIQANRNSSSEEMEETANCFLNMLCIYK

Nucleotide


Download         Length: 606 bp        

>NTDB_id=24261 VF_RS11340 WP_011262617.1 2446537..2447142(+) (hapR) [Aliivibrio fischeri ES114]
ATGGATACAATCCAAAAAAGGCCTAGAACAAGGCTATCTCCAGAAAAGCGCAAAGAACAATTACTTGATATCGCAATTGA
AGTGTTTTCACAACGTGGCATTGGTCGCGGTGGTCATGCTGATATTGCAGAAATCGCTCAGGTCTCTGTCGCTACCGTGT
TTAATTACTTCCCAACAAGAGAAGATCTTGTTGATGATGTATTAAATAAAGTCGAAAACGAATTTCACCAATTCATCAAT
AACTCAATTTCTCTTGATCTTGATGTTCGTTCTAACCTTAATACTCTTCTTCTGAATATCATTGACAGTGTTCAAACTGG
TAATAAGTGGATCAAAGTATGGTTTGAATGGAGTACCTCTACTCGTGATGAAGTATGGCCTCTTTTCTTAAGTACTCACT
CAAATACAAATCAAGTTATCAAAACTATGTTTGAAGAAGGTATTGAACGTAACGAAGTATGTAACGATCATACCCCTGAA
AACCTAACAAAAATGCTTCATGGTATTTGTTACTCTGTTTTCATTCAGGCTAACCGTAATAGTTCATCTGAAGAAATGGA
AGAAACGGCAAATTGTTTCTTAAATATGTTGTGTATTTATAAATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(21-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5E2S4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hapR Vibrio cholerae C6706

59.799

99.005

0.592
  hapR Vibrio cholerae strain A1552

59.799

99.005

0.592
  opaR Vibrio parahaemolyticus RIMD 2210633

59.5

99.502

0.592

Multiple sequence alignment