Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK/comK1   Type   Regulator
Locus tag   ssp1_RS08585 Genome accession   NZ_CP022881
Coordinates   1782067..1782636 (-) Length   189 a.a.
NCBI ID   WP_049425458.1    Uniprot ID   -
Organism   Staphylococcus sp. M0911     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1777067..1787636
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ssp1_RS08555 (Ssp1_17260) - 1778506..1779444 (+) 939 WP_075778623.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  ssp1_RS08560 (Ssp1_17270) - 1779491..1780042 (-) 552 WP_075778622.1 GNAT family N-acetyltransferase -
  ssp1_RS08565 (Ssp1_17280) - 1780246..1780455 (+) 210 WP_002450742.1 TM2 domain-containing protein -
  ssp1_RS12125 (Ssp1_17290) - 1780559..1780660 (+) 102 WP_253187594.1 SAR1012 family small protein -
  ssp1_RS08570 (Ssp1_17300) - 1780883..1781239 (+) 357 WP_075778621.1 DoxX family protein -
  ssp1_RS08585 (Ssp1_17330) comK/comK1 1782067..1782636 (-) 570 WP_049425458.1 competence protein ComK Regulator
  ssp1_RS08590 (Ssp1_17340) - 1782855..1783073 (+) 219 WP_002450745.1 IDEAL domain-containing protein -
  ssp1_RS08595 (Ssp1_17350) - 1783151..1784137 (-) 987 WP_075778101.1 lipoate--protein ligase -
  ssp1_RS08600 (Ssp1_17360) - 1784342..1784527 (+) 186 WP_002450747.1 DUF2187 family protein -
  ssp1_RS08605 (Ssp1_17370) - 1784533..1785135 (+) 603 WP_002450748.1 CPBP family glutamic-type intramembrane protease -
  ssp1_RS08610 (Ssp1_17380) - 1785291..1786799 (-) 1509 WP_075778100.1 bifunctional UDP-sugar hydrolase/5'-nucleotidase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 22439.67 Da        Isoelectric Point: 9.5263

>NTDB_id=242481 ssp1_RS08585 WP_049425458.1 1782067..1782636(-) (comK/comK1) [Staphylococcus sp. M0911]
MTTQNIYVIRKGDMVIRPNYDDQNQPNGSEIIRFDKTVLQSPFKVQKIIERSCKFYGNNYLSKKAETNRITGISSKPPIL
LTPLFPTYFFPTHSDRQEENLWINMHYVESIKELKHRKCKIIFANNETITLNVSFHSLWHQYTNAIFFYYMVDKQSRMKS
NDPDKPIDYEKSSLNIFEALSRYSLFVDK

Nucleotide


Download         Length: 570 bp        

>NTDB_id=242481 ssp1_RS08585 WP_049425458.1 1782067..1782636(-) (comK/comK1) [Staphylococcus sp. M0911]
ATGACAACTCAGAATATATACGTAATTAGAAAGGGAGACATGGTGATTAGGCCTAATTATGATGATCAAAATCAACCAAA
TGGTTCAGAAATTATTCGGTTTGATAAGACAGTCCTACAAAGTCCATTTAAAGTTCAGAAGATTATTGAGAGGTCATGTA
AATTTTATGGCAACAATTATTTAAGTAAAAAGGCTGAAACCAATCGAATTACAGGTATCTCTAGTAAACCCCCAATTTTA
TTAACTCCTTTATTCCCAACTTACTTTTTTCCTACTCATTCAGATCGACAAGAAGAAAATTTATGGATTAACATGCATTA
TGTTGAGTCTATTAAAGAATTAAAACATCGTAAATGTAAAATCATATTTGCAAACAATGAAACCATTACCCTAAATGTAT
CATTCCACAGTTTATGGCATCAGTATACGAACGCAATCTTCTTTTATTATATGGTAGATAAACAATCCCGTATGAAATCT
AATGACCCCGATAAACCTATCGATTATGAAAAATCCTCACTAAACATTTTTGAAGCATTATCACGTTATTCGCTATTTGT
AGATAAATAA

Domains

Predicted by InterproScan.

ComK protein (ComK)

(5-156)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK/comK1 Staphylococcus aureus MW2

80.423

100

0.804
  comK/comK1 Staphylococcus aureus N315

80.423

100

0.804

Multiple sequence alignment