Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   ssp1_RS07660 Genome accession   NZ_CP022881
Coordinates   1587881..1588750 (-) Length   289 a.a.
NCBI ID   WP_075777937.1    Uniprot ID   -
Organism   Staphylococcus sp. M0911     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1582881..1593750
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ssp1_RS07645 (Ssp1_15430) xerC 1583146..1584039 (-) 894 WP_075777938.1 tyrosine recombinase XerC -
  ssp1_RS07650 (Ssp1_15440) trmFO 1584204..1585511 (-) 1308 WP_049425631.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  ssp1_RS07655 (Ssp1_15450) topA 1585628..1587703 (-) 2076 WP_171970108.1 type I DNA topoisomerase -
  ssp1_RS07660 (Ssp1_15460) dprA 1587881..1588750 (-) 870 WP_075777937.1 DNA-processing protein DprA Machinery gene
  ssp1_RS07665 (Ssp1_15470) sucD 1588978..1589883 (-) 906 WP_118828170.1 succinate--CoA ligase subunit alpha -
  ssp1_RS07670 (Ssp1_15480) sucC 1589905..1591071 (-) 1167 WP_118828171.1 ADP-forming succinate--CoA ligase subunit beta -
  ssp1_RS07675 (Ssp1_15490) - 1591179..1591949 (-) 771 WP_049425627.1 ribonuclease HII -
  ssp1_RS07680 (Ssp1_15500) ylqF 1591942..1592817 (-) 876 WP_049425626.1 ribosome biogenesis GTPase YlqF -

Sequence

Protein


Download         Length: 289 a.a.        Molecular weight: 33874.99 Da        Isoelectric Point: 9.0133

>NTDB_id=242480 ssp1_RS07660 WP_075777937.1 1587881..1588750(-) (dprA) [Staphylococcus sp. M0911]
MNEYFLLKLYWSQFTTSQIHQFYRYYPHIFQMTPKEQETSLLRWITHHHPMFLSKFHKYKQINIQEIMKILRQLHVKYIT
CFDQGYPHLLKEIYDYPFVLFYKGDEKLFLSSQTLAIVGSRKCTHYTQETLHFLFPSFKDKNITIISGLAEGADSEAHIQ
ALKNHLPTIAVLGFGHHYYYPRSSVSLRNRIEKEGLVISEYPPFSPIAKYKFPERNRIISGLSKGVLLTEANERSGSRIT
IDCALEQNRNVYVLPGKLFDSKTKGNLLLHQEGATIVVSEEDILQDYLN

Nucleotide


Download         Length: 870 bp        

>NTDB_id=242480 ssp1_RS07660 WP_075777937.1 1587881..1588750(-) (dprA) [Staphylococcus sp. M0911]
TTGAACGAATACTTTTTACTTAAATTATACTGGTCGCAATTTACAACCTCTCAAATCCATCAATTCTATCGGTACTACCC
ACATATTTTCCAAATGACTCCTAAAGAACAAGAAACGTCATTATTACGCTGGATAACACATCATCATCCTATGTTTCTTT
CTAAATTTCATAAATATAAACAAATAAATATACAAGAAATTATGAAAATTCTTCGACAATTACATGTAAAATATATCACT
TGTTTCGACCAAGGTTATCCACATTTATTAAAAGAAATCTATGATTATCCATTTGTTCTATTTTATAAAGGAGATGAAAA
GCTATTTTTAAGTAGTCAAACTCTAGCCATAGTTGGGTCTAGGAAATGTACACATTATACTCAAGAAACGCTTCATTTTC
TTTTTCCTTCATTTAAAGATAAAAATATTACAATCATTTCTGGACTAGCAGAAGGCGCTGATAGTGAAGCACACATACAA
GCATTGAAAAATCATTTACCAACCATTGCAGTACTAGGTTTTGGACACCATTATTATTATCCTAGATCCTCGGTTTCATT
AAGAAATCGGATTGAAAAAGAGGGGTTAGTCATTTCTGAATATCCACCTTTTTCGCCAATTGCTAAATATAAGTTTCCAG
AAAGAAATAGGATTATTAGTGGTTTGTCAAAAGGTGTATTACTAACTGAGGCAAACGAAAGAAGTGGTAGCAGAATTACA
ATTGATTGTGCATTAGAACAAAATAGAAACGTGTATGTTTTACCAGGTAAATTATTTGATTCCAAAACAAAAGGCAATTT
ATTATTACACCAAGAAGGGGCTACTATAGTCGTTAGTGAAGAAGATATTTTACAAGACTATTTAAATTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus N315

56.25

99.654

0.561
  dprA Staphylococcus aureus MW2

56.25

99.654

0.561

Multiple sequence alignment