Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   CCZ37_RS08505 Genome accession   NZ_CP022741
Coordinates   1857260..1858666 (-) Length   468 a.a.
NCBI ID   WP_010320686.1    Uniprot ID   -
Organism   Vibrio qinghaiensis strain Q67     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1852260..1863666
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCZ37_RS08470 (CCZ37_08455) moaE 1852919..1853389 (-) 471 WP_208613910.1 molybdopterin synthase catalytic subunit MoaE -
  CCZ37_RS08475 (CCZ37_08460) moaD 1853392..1853637 (-) 246 WP_010320680.1 molybdopterin synthase sulfur carrier subunit -
  CCZ37_RS08480 (CCZ37_08465) moaC 1853630..1854130 (-) 501 WP_010320681.1 cyclic pyranopterin monophosphate synthase MoaC -
  CCZ37_RS08485 (CCZ37_08470) moaB 1854141..1854653 (-) 513 WP_010320682.1 molybdenum cofactor biosynthesis protein B -
  CCZ37_RS08490 (CCZ37_08475) moaA 1854731..1855720 (-) 990 WP_094500820.1 GTP 3',8-cyclase MoaA -
  CCZ37_RS08495 (CCZ37_08480) - 1856032..1856922 (+) 891 WP_094500297.1 YvcK family protein -
  CCZ37_RS08500 (CCZ37_08485) luxU 1856919..1857257 (-) 339 WP_010320685.1 quorum-sensing phosphorelay protein LuxU -
  CCZ37_RS08505 (CCZ37_08490) luxO 1857260..1858666 (-) 1407 WP_010320686.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  CCZ37_RS08510 (CCZ37_08495) uvrB 1858916..1860946 (-) 2031 WP_094500298.1 excinuclease ABC subunit UvrB -
  CCZ37_RS19320 (CCZ37_08505) - 1862019..1863056 (-) 1038 WP_339373700.1 GGDEF domain-containing protein -
  CCZ37_RS19630 (CCZ37_08510) - 1863096..1863614 (-) 519 Protein_1590 Tn7 transposase TnsA N-terminal domain-containing protein -

Sequence

Protein


Download         Length: 468 a.a.        Molecular weight: 52292.65 Da        Isoelectric Point: 5.7021

>NTDB_id=242070 CCZ37_RS08505 WP_010320686.1 1857260..1858666(-) (luxO) [Vibrio qinghaiensis strain Q67]
MQPDFSLQKTKYLLMVEDTASVAALYRSYLTPLEIDINIVGTGRDAIESLAHREPDLILLDLRLPDMTGMDVLHAVRNQY
PNVPVIFMTAHGSIDTAVEAMRHGAQDFLIKPCEADRLRVTVNNAIRKASKLKNEADNPGNQNYQGFIGSSQTMQSVYRT
IDSAASSKASIFITGESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATDRQGAAELADG
GTLFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRE
RGDDVIEIAYSLLGFMSKEEGKGFVRLAPEVVERFTRYEWPGNVRQLQNVLRNVVVLNHGNEIELSMLPPPLNQVVDNKI
RLANLTTETRKENITVHDIFPLWMTEKQAIEQAIEACDGNIPKAASYLDVSPSTIYRKLQAWNSRENS

Nucleotide


Download         Length: 1407 bp        

>NTDB_id=242070 CCZ37_RS08505 WP_010320686.1 1857260..1858666(-) (luxO) [Vibrio qinghaiensis strain Q67]
ATGCAACCTGACTTTTCTCTACAAAAGACTAAATACCTTTTGATGGTGGAAGATACGGCTTCCGTTGCGGCGCTGTATCG
TTCATACCTCACCCCCCTTGAAATCGATATCAATATTGTTGGTACTGGTCGTGATGCGATAGAAAGTTTAGCTCATCGAG
AGCCGGATCTCATATTGCTGGATCTTCGGTTACCCGATATGACGGGTATGGACGTTTTACATGCTGTGAGAAATCAATAC
CCCAATGTGCCTGTGATATTCATGACGGCTCATGGTTCCATTGATACCGCAGTGGAAGCGATGCGCCACGGCGCCCAAGA
TTTCTTGATCAAACCTTGTGAAGCAGACCGTTTGCGCGTCACGGTTAACAACGCTATTCGTAAAGCTAGCAAACTGAAAA
ACGAGGCGGATAATCCGGGCAACCAGAATTATCAAGGCTTTATCGGCAGTAGCCAAACCATGCAATCTGTCTATCGAACC
ATTGACTCTGCGGCCTCCAGTAAAGCCAGTATTTTTATTACCGGCGAAAGTGGTACAGGTAAAGAGGTGTGCGCAGAAGC
GATTCATGCGGCCAGTAAGCGTGGCGATAAGCCCTTCATTGCGATTAACTGCGCTGCAATTCCTAAAGATTTAATAGAAA
GCGAACTCTTTGGCCACGTGAAAGGCGCATTTACCGGCGCCGCGACCGATCGCCAAGGTGCTGCCGAGTTGGCTGATGGT
GGCACACTGTTTTTGGATGAACTGTGTGAAATGGATTTGGATTTGCAGACCAAGCTGTTGCGCTTTATCCAAACGGGTAC
ATTCCAGAAAGTGGGCTCATCGAAGATGAAAAGTGTCGATGTCCGTTTTGTCTGCGCTACCAACCGCGATCCATGGAAAG
AGGTGCAAGAGGGGCGTTTTCGTGAAGATTTGTACTATCGTCTTTATGTGATCCCATTGCATTTACCACCGCTACGCGAG
CGAGGCGATGACGTTATTGAAATTGCTTACTCTTTGCTCGGCTTTATGTCTAAAGAAGAAGGCAAAGGTTTTGTCCGCTT
AGCGCCAGAGGTTGTGGAGCGTTTTACGCGCTATGAATGGCCGGGTAATGTGCGTCAACTGCAAAACGTGTTGCGGAATG
TGGTGGTATTGAACCACGGTAACGAGATCGAACTGAGCATGCTACCCCCACCACTGAATCAAGTCGTGGATAACAAGATC
CGATTAGCCAACTTAACGACGGAAACACGCAAGGAAAATATAACCGTGCACGATATTTTTCCTTTATGGATGACGGAAAA
ACAAGCCATCGAACAAGCGATAGAAGCGTGTGATGGTAATATTCCTAAAGCAGCCAGTTATTTAGACGTTAGCCCTTCAA
CTATCTACCGCAAGCTGCAAGCGTGGAACAGTAGAGAGAACTCATAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(14-122)

Sigma-54 interaction domain (Sigma54_activat)

(148-313)

Bacterial regulatory protein, Fis family (HTH_8)

(422-462)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

88.641

95.94

0.85
  pilR Pseudomonas aeruginosa PAK

38.411

96.795

0.372

Multiple sequence alignment