Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   CCZ37_RS02475 Genome accession   NZ_CP022741
Coordinates   491263..491880 (-) Length   205 a.a.
NCBI ID   WP_094499658.1    Uniprot ID   A0A223MVI2
Organism   Vibrio qinghaiensis strain Q67     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 486263..496880
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCZ37_RS02465 (CCZ37_02460) aceF 487550..489433 (+) 1884 WP_094499657.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -
  CCZ37_RS02470 (CCZ37_02465) lpdA 489734..491161 (+) 1428 WP_088720890.1 dihydrolipoyl dehydrogenase -
  CCZ37_RS02475 (CCZ37_02470) opaR 491263..491880 (-) 618 WP_094499658.1 LuxR/HapR/OpaR family quorum-sensing transcriptional regulator Regulator
  CCZ37_RS02480 (CCZ37_02475) hpt 492248..492778 (+) 531 WP_010319544.1 hypoxanthine phosphoribosyltransferase -
  CCZ37_RS02485 (CCZ37_02480) can 492866..493534 (-) 669 WP_010319545.1 carbonate dehydratase -
  CCZ37_RS02490 (CCZ37_02485) - 493785..495452 (+) 1668 WP_094499659.1 SulP family inorganic anion transporter -
  CCZ37_RS02495 (CCZ37_02490) - 495594..496514 (+) 921 WP_026027559.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 23786.22 Da        Isoelectric Point: 5.8316

>NTDB_id=242057 CCZ37_RS02475 WP_094499658.1 491263..491880(-) (opaR) [Vibrio qinghaiensis strain Q67]
METSIEKRHRTRLSPQKRKLQLMEIALEVFATRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDDVLTHVVRQFSNFL
ADNIDLDLHAKDNLTNLTTEMISLVIEDCHWLKVWFEWSASTREEVWPLFVSTNRTNQLLVQNMFIKAIERGEVCDQHDP
EHLATLFLGIFYSLFVQANRVRDEDSMNALVKSYLSMLCIYKKDH

Nucleotide


Download         Length: 618 bp        

>NTDB_id=242057 CCZ37_RS02475 WP_094499658.1 491263..491880(-) (opaR) [Vibrio qinghaiensis strain Q67]
ATGGAAACATCGATAGAAAAACGCCACAGAACTCGCTTATCACCACAAAAACGCAAACTTCAACTGATGGAGATCGCTCT
TGAAGTGTTTGCTACACGGGGAATAGGCCGAGGTGGTCACGCAGATATTGCTGAAATCGCCCAAGTTTCAGTAGCCACTG
TCTTTAACTACTTTCCAACCCGCGAAGATTTAGTCGACGACGTCCTCACCCATGTTGTACGTCAGTTTTCAAATTTCCTC
GCAGACAATATTGACCTAGATTTACATGCGAAAGATAACTTAACCAACCTAACCACTGAGATGATTTCTCTTGTGATTGA
AGATTGTCACTGGTTAAAAGTATGGTTTGAATGGAGCGCTTCAACGCGCGAAGAAGTGTGGCCACTTTTTGTCTCCACCA
ACCGTACTAATCAACTTTTGGTGCAGAATATGTTCATCAAAGCGATTGAACGTGGCGAAGTGTGCGATCAACATGATCCA
GAACATCTTGCTACGCTCTTTCTTGGCATCTTCTACTCGCTATTTGTACAAGCAAATCGCGTACGAGATGAAGATAGCAT
GAATGCTCTTGTGAAAAGCTACCTCAGCATGCTCTGCATCTATAAAAAGGATCACTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(23-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A223MVI2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

81.188

98.537

0.8
  hapR Vibrio cholerae C6706

75.248

98.537

0.741
  hapR Vibrio cholerae strain A1552

75.248

98.537

0.741

Multiple sequence alignment