Detailed information NTG0241642

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: Kalk_RS05725
• Genome accession: NZ_CP022684
• Coordinates: 1353373..1354752 (+)
• Length: 459 a.a.
• NCBI ID: WP_101893289.1
• Uniprot ID: A0A2K9LIE5
• Organism: Ketobacter alkanivorans strain GI5
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 1348373..1359752

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
Kalk_RS05705 (Kalk_05705)	-	1348901..1349743 (+)	843	WP_101893285.1	outer membrane protein assembly factor BamD	-
Kalk_RS05710 (Kalk_05710)	-	1349762..1351405 (-)	1644	WP_101893286.1	NAD+ synthase	-
Kalk_RS05715 (Kalk_05715)	-	1351516..1351749 (+)	234	WP_101893287.1	PP0621 family protein	-
Kalk_RS05720 (Kalk_05720)	-	1351742..1353370 (+)	1629	WP_101893288.1	nitrogen regulation protein NR(II)	-
Kalk_RS05725 (Kalk_05725)	pilR	1353373..1354752 (+)	1380	WP_101893289.1	sigma-54 dependent transcriptional regulator	Regulator
Kalk_RS05730 (Kalk_05730)	thiO	1354761..1355870 (-)	1110	WP_101893290.1	glycine oxidase ThiO	-
Kalk_RS05735 (Kalk_05735)	-	1355981..1356493 (+)	513	WP_267892440.1	Tfp pilus assembly protein FimT/FimU	-
Kalk_RS21330 (Kalk_05740)	-	1356575..1357225 (-)	651	WP_199768017.1	PEP-CTERM sorting domain-containing protein	-

Sequence

Protein

• Length: 459 a.a.
• Molecular weight: 50916.19 Da
• Isoelectric Point: 4.6997

>NTDB_id=241642 Kalk_RS05725 WP_101893289.1 1353373..1354752(+) (pilR) [Ketobacter alkanivorans strain GI5]
MSQYKALIVDDEPDIRELLDLTLSRMDIETFTAANIDSAHVALDQEKFDLCITDMNLPDGNGIDLVKYIQANNPSLPVAV
LTAYGSMETAITALKAGAFDFVSKPVDLQRLRDLVNTALKLKFEKQEPATGETDSPILGTSPQVRKLQAQIKKLARSQAP
VYISGESGSGKELVAKEIHRLGPRTDGPFVPVNCGAIPNELMESEFFGHRKGSFTGAYEDKTGLFQAAQGGTLFLDEVAD
LPMQMQVKLLRAIQEKAVRPVGSQKELATDVRILSATHKDLAKLVEQGDFRQDLFYRINVIQMSVPPLRERGEDIILLAK
RMLQSLAQDWEMELPSLSPKAEAALQEYQFPGNVRELENILERAVTLCDDEVITPEHLQLPTDGTPVVKPIAGTSPDHAI
PDFVEGDSLEEYLTDIEKQAILKALEETRWNRTAAAKKLGMSFRSLRYRLKKLGLDTDD

Nucleotide

• Length: 1380 bp

>NTDB_id=241642 Kalk_RS05725 WP_101893289.1 1353373..1354752(+) (pilR) [Ketobacter alkanivorans strain GI5]
ATGAGCCAATATAAAGCACTAATTGTTGATGATGAGCCTGATATAAGGGAACTGCTCGATCTGACGCTGTCTCGAATGGA
CATAGAAACCTTTACCGCAGCCAATATTGATTCTGCTCATGTTGCACTTGATCAGGAAAAATTTGATCTCTGCATTACCG
ATATGAACCTGCCAGATGGCAATGGCATTGATTTAGTGAAATACATTCAAGCCAACAACCCTAGCTTGCCGGTAGCTGTT
CTTACCGCCTATGGCAGCATGGAAACGGCCATTACTGCGCTGAAAGCAGGCGCCTTTGACTTTGTATCCAAACCAGTAGA
TCTTCAACGATTGCGGGATCTGGTAAACACCGCTCTCAAATTAAAATTTGAAAAACAGGAGCCTGCCACCGGCGAGACAG
ACTCACCCATATTGGGCACATCGCCACAAGTAAGAAAACTACAAGCGCAAATCAAAAAATTGGCGCGCAGCCAGGCTCCA
GTCTATATCAGCGGAGAATCAGGAAGCGGCAAAGAGCTGGTGGCCAAAGAGATACACCGCCTTGGCCCTCGCACAGATGG
CCCATTTGTTCCAGTGAATTGCGGCGCCATCCCCAACGAATTGATGGAAAGCGAATTTTTCGGGCACCGAAAAGGCAGCT
TCACCGGCGCCTACGAGGACAAAACAGGCCTATTTCAAGCCGCTCAAGGTGGCACTCTTTTTCTTGATGAAGTGGCAGAC
CTGCCCATGCAAATGCAGGTTAAACTACTGCGGGCAATTCAAGAAAAAGCCGTGCGCCCGGTGGGCTCACAGAAAGAACT
TGCCACCGATGTACGCATACTGAGCGCCACCCACAAAGATCTAGCCAAACTGGTGGAGCAAGGGGATTTCAGACAGGATC
TTTTCTATCGCATTAATGTCATCCAGATGAGCGTTCCTCCCTTAAGAGAAAGAGGAGAAGACATCATCTTACTGGCCAAG
CGGATGCTGCAATCACTGGCCCAGGATTGGGAAATGGAACTGCCAAGCCTGAGCCCAAAAGCCGAAGCCGCGTTGCAAGA
GTACCAATTTCCCGGCAACGTGCGAGAGCTGGAAAATATATTGGAACGCGCCGTTACCCTGTGTGACGATGAAGTCATCA
CACCCGAGCACCTGCAACTGCCCACCGATGGCACGCCGGTGGTGAAACCCATAGCAGGAACCAGCCCGGATCATGCCATC
CCTGATTTTGTAGAAGGTGACTCTCTAGAAGAATACCTCACCGACATTGAAAAGCAGGCGATCCTCAAAGCACTGGAAGA
AACACGCTGGAACCGCACTGCAGCAGCGAAAAAGCTCGGTATGAGTTTTCGCTCGCTGCGCTATCGTCTGAAAAAGCTGG
GACTTGATACCGACGACTAG

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (7-115)

• Bacterial regulatory protein, Fis family (HTH_8) (413-453)

• Sigma-54 interaction domain (Sigma54_activat) (137-303)

3D structure

• AlphaFold DB: A0A2K9LIE5

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	65.351	99.346	0.649
pilR	Acinetobacter baumannii strain A118	53.043	100	0.532