Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   CGP84_RS07995 Genome accession   NZ_CP022682
Coordinates   1602000..1602446 (-) Length   148 a.a.
NCBI ID   WP_072357807.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 78     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1597000..1607446
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CGP84_RS07965 (CGP84_01468) gcvPA 1597926..1599272 (-) 1347 WP_000019687.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  CGP84_RS07970 (CGP84_01469) gcvT 1599292..1600383 (-) 1092 WP_000093354.1 glycine cleavage system aminomethyltransferase GcvT -
  CGP84_RS07975 (CGP84_01470) - 1600542..1601066 (-) 525 WP_001015120.1 shikimate kinase -
  CGP84_RS07980 - 1601056..1601202 (-) 147 WP_001789879.1 hypothetical protein -
  CGP84_RS07985 (CGP84_01471) comGF 1601299..1601796 (-) 498 WP_115288401.1 competence type IV pilus minor pilin ComGF Machinery gene
  CGP84_RS07990 (CGP84_01472) comGE 1601714..1602013 (-) 300 WP_000844415.1 hypothetical protein Machinery gene
  CGP84_RS07995 (CGP84_01473) comGD 1602000..1602446 (-) 447 WP_072357807.1 competence type IV pilus minor pilin ComGD Machinery gene
  CGP84_RS08000 (CGP84_01474) comGC 1602424..1602735 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  CGP84_RS08005 (CGP84_01475) comGB 1602749..1603819 (-) 1071 WP_000776413.1 competence type IV pilus assembly protein ComGB Machinery gene
  CGP84_RS08010 (CGP84_01476) comGA 1603791..1604765 (-) 975 WP_115288402.1 competence type IV pilus ATPase ComGA Machinery gene
  CGP84_RS08015 (CGP84_01477) - 1604817..1605440 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  CGP84_RS08020 (CGP84_01478) - 1605437..1605766 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  CGP84_RS08025 (CGP84_01479) - 1605766..1606752 (-) 987 WP_000161315.1 ROK family glucokinase -
  CGP84_RS08030 - 1606749..1606952 (-) 204 WP_000087561.1 YqgQ family protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17165.33 Da        Isoelectric Point: 10.3312

>NTDB_id=241613 CGP84_RS07995 WP_072357807.1 1602000..1602446(-) (comGD) [Staphylococcus aureus strain 78]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISLITELNYFKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIDNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=241613 CGP84_RS07995 WP_072357807.1 1602000..1602446(-) (comGD) [Staphylococcus aureus strain 78]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTTTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTCTTA
TTACTGAATTGAATTATTTTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGCATAACAATTGACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

98.649

100

0.986
  comGD Staphylococcus aureus N315

98.649

100

0.986

Multiple sequence alignment