Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   CHF41_RS04700 Genome accession   NZ_CP022680
Coordinates   924085..925134 (+) Length   349 a.a.
NCBI ID   WP_119876209.1    Uniprot ID   -
Organism   Streptococcus respiraculi strain HTS25     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 919085..930134
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CHF41_RS04660 - 919342..920241 (+) 900 WP_119877136.1 haloacid dehalogenase-like hydrolase -
  CHF41_RS04665 - 920627..920842 (+) 216 WP_119877137.1 YqgQ family protein -
  CHF41_RS04670 - 920843..921232 (+) 390 WP_119876206.1 rhodanese-like domain-containing protein -
  CHF41_RS04675 - 921259..922884 (+) 1626 WP_162911919.1 SEC10/PgrA surface exclusion domain-containing protein -
  CHF41_RS04690 rsmD 923081..923620 (+) 540 WP_119876207.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  CHF41_RS04695 coaD 923610..924098 (+) 489 WP_119876208.1 pantetheine-phosphate adenylyltransferase -
  CHF41_RS04700 sepM 924085..925134 (+) 1050 WP_119876209.1 SepM family pheromone-processing serine protease Regulator
  CHF41_RS04705 - 925740..926306 (+) 567 WP_119876210.1 YutD family protein -
  CHF41_RS04710 rlmN 926314..927426 (+) 1113 WP_119876211.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -
  CHF41_RS04715 - 927423..927968 (+) 546 WP_119876212.1 VanZ family protein -
  CHF41_RS04720 trpB 928468..929649 (+) 1182 WP_119876213.1 tryptophan synthase subunit beta -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 37744.22 Da        Isoelectric Point: 6.5222

>NTDB_id=241575 CHF41_RS04700 WP_119876209.1 924085..925134(+) (sepM) [Streptococcus respiraculi strain HTS25]
MKKNRKLLLILSLVVSTILLWGAFLFPLPYYIESPGGASDIRSVLTVGDKKDNKPGSYNFVYVQVKPATAVQLLFAALDS
HSDIISKEELAGGANTEEFYRISQFYMETSQNMAKYQGLTLAKKETSLEFFGVYVLNVTDDSTFKNILNIADTVVSVNGK
TFKSSPELIEYVSGLKLGSDVKVGYLSGGQEQTADGKIIKLANGKNGIGIGLVDHTEVKSSEKIDFQTGNIGGPSAGLMF
TLAIYTQLADPDLRDGRMIAGTGTIEQDGSVGDIGGADKKVLSAAKAGASIFFVPNNPVDKEILKQKPDAKTNYEEAMEA
VKKDKLDIKVVPVTNVKDAIDYLKKTKSQ

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=241575 CHF41_RS04700 WP_119876209.1 924085..925134(+) (sepM) [Streptococcus respiraculi strain HTS25]
ATGAAAAAAAATAGAAAATTACTCCTGATTCTCTCGCTTGTCGTATCAACTATTTTATTATGGGGGGCTTTTCTTTTCCC
ACTTCCCTACTATATCGAAAGTCCTGGTGGTGCATCGGATATCCGGTCGGTATTAACAGTTGGTGATAAAAAAGATAACA
AGCCAGGTTCTTATAACTTTGTCTACGTACAGGTCAAGCCTGCAACGGCTGTTCAGCTCTTGTTTGCAGCTCTTGATTCG
CACTCAGACATTATTTCCAAGGAAGAATTAGCCGGTGGTGCGAATACGGAAGAATTTTATCGTATCAGCCAATTCTACAT
GGAAACATCGCAAAATATGGCCAAATACCAAGGCTTGACCTTGGCGAAGAAAGAAACGTCTCTGGAATTTTTCGGGGTTT
ACGTTTTGAATGTAACGGATGATTCAACTTTTAAGAATATCTTGAATATTGCAGATACCGTAGTCAGTGTCAATGGCAAG
ACCTTTAAGAGTTCACCTGAATTGATTGAATACGTCAGCGGTTTGAAACTTGGTAGCGACGTCAAGGTCGGTTATTTGAG
TGGAGGCCAAGAACAGACAGCAGACGGAAAAATCATCAAGTTAGCAAATGGTAAAAATGGGATTGGGATTGGTCTGGTTG
ACCATACTGAAGTGAAAAGTAGTGAGAAGATTGACTTCCAGACAGGCAATATCGGTGGTCCTAGTGCAGGCTTGATGTTT
ACGCTTGCCATTTATACCCAGTTGGCGGATCCTGATTTGCGGGACGGTCGCATGATTGCAGGAACTGGTACCATTGAGCA
AGACGGTTCAGTCGGAGATATCGGTGGAGCAGACAAGAAAGTTCTCTCTGCGGCCAAAGCAGGAGCAAGTATTTTCTTTG
TCCCGAATAACCCTGTTGACAAAGAGATTTTGAAGCAAAAACCAGATGCTAAAACCAACTATGAAGAAGCAATGGAGGCT
GTTAAAAAGGACAAATTAGACATCAAGGTCGTACCTGTGACCAATGTCAAAGATGCCATTGACTACCTCAAGAAAACCAA
GAGCCAGTAA

Domains

Predicted by InterproScan.

PDZ domain (PDZ_2)

(132-195)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(232-299)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

60.87

98.854

0.602

Multiple sequence alignment