Detailed information    

insolico Bioinformatically predicted

Overview

Name   covR   Type   Regulator
Locus tag   CHF41_RS04245 Genome accession   NZ_CP022680
Coordinates   841157..841849 (+) Length   230 a.a.
NCBI ID   WP_119876135.1    Uniprot ID   -
Organism   Streptococcus respiraculi strain HTS25     
Function   repress comR expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 836157..846849
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CHF41_RS04220 - 836569..837912 (+) 1344 WP_119876130.1 DEAD/DEAH box helicase -
  CHF41_RS04225 - 837939..838163 (+) 225 WP_119876131.1 DUF4059 family protein -
  CHF41_RS04230 trxB 838178..839095 (+) 918 WP_119876132.1 thioredoxin-disulfide reductase -
  CHF41_RS04235 - 839105..839641 (+) 537 WP_119876133.1 YceD family protein -
  CHF41_RS04240 gndA 839729..841153 (+) 1425 WP_119876134.1 NADP-dependent phosphogluconate dehydrogenase -
  CHF41_RS04245 covR 841157..841849 (+) 693 WP_119876135.1 response regulator transcription factor Regulator
  CHF41_RS04250 - 841923..842120 (-) 198 WP_119876136.1 transposase -
  CHF41_RS04255 - 842503..843636 (+) 1134 WP_119876137.1 AI-2E family transporter -
  CHF41_RS04260 nrdR 843736..844203 (+) 468 WP_119876138.1 transcriptional regulator NrdR -
  CHF41_RS04265 - 844212..845360 (+) 1149 WP_119876139.1 replication initiation/membrane attachment protein -
  CHF41_RS04270 dnaI 845361..846260 (+) 900 WP_119876140.1 primosomal protein DnaI -

Sequence

Protein


Download         Length: 230 a.a.        Molecular weight: 26576.48 Da        Isoelectric Point: 5.2022

>NTDB_id=241572 CHF41_RS04245 WP_119876135.1 841157..841849(+) (covR) [Streptococcus respiraculi strain HTS25]
MVKKILIAGRERNLSHFVSMELQKKDYLVDYTSTGKEALQLAHETDFDLILMSFRLSDMSSQELAAELVNIKPTTVMIVV
VDSEDAAIYGAEIQRYAVSYIIKPFVISDLVDQVTSIFRGRDYIDEHCKQVKLQAAYRDLKIDFQNRTVTRGPELINLTR
REYDLLATLMNSQETLTREQLLDRVWKYEATAETNVVDVYIRYLRGKLDLPGQESYIKTVRGVGYAMREE

Nucleotide


Download         Length: 693 bp        

>NTDB_id=241572 CHF41_RS04245 WP_119876135.1 841157..841849(+) (covR) [Streptococcus respiraculi strain HTS25]
ATGGTAAAAAAAATCTTAATTGCAGGCCGTGAGCGCAATCTTTCTCACTTTGTCTCCATGGAGTTGCAAAAAAAAGACTA
CTTGGTCGACTATACTTCTACGGGAAAAGAAGCGCTTCAGCTTGCCCATGAGACAGATTTTGACTTGATTCTCATGAGTT
TTCGCCTGTCAGACATGTCTAGTCAGGAGTTAGCGGCAGAACTGGTAAATATCAAGCCGACAACGGTCATGATTGTGGTA
GTGGACAGCGAGGACGCAGCAATCTACGGTGCTGAGATTCAGCGCTATGCTGTTTCTTATATTATCAAACCTTTTGTCAT
CAGTGATTTAGTCGATCAGGTAACTTCTATCTTTAGGGGGCGGGATTATATTGATGAGCATTGCAAGCAGGTAAAGCTAC
AAGCAGCTTATCGGGACTTGAAGATTGATTTTCAAAATCGCACTGTCACCCGTGGTCCAGAGTTGATTAACCTGACCCGC
AGGGAATATGATCTTCTTGCGACCTTGATGAACAGTCAGGAGACCTTGACCCGAGAGCAACTCTTGGATCGGGTCTGGAA
ATATGAAGCCACAGCTGAAACCAATGTGGTTGATGTCTACATCCGCTATTTGCGTGGGAAATTAGACCTACCCGGTCAAG
AATCCTATATCAAAACCGTCCGCGGTGTAGGCTATGCCATGCGGGAAGAATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-114)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(156-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  covR Streptococcus salivarius strain HSISS4

49.569

100

0.5
  covR Lactococcus lactis subsp. lactis strain DGCC12653

46.725

99.565

0.465

Multiple sequence alignment