Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   CHF41_RS03780 Genome accession   NZ_CP022680
Coordinates   750769..751836 (+) Length   355 a.a.
NCBI ID   WP_119876063.1    Uniprot ID   -
Organism   Streptococcus respiraculi strain HTS25     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 745769..756836
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CHF41_RS03765 amiA3 746295..748274 (+) 1980 WP_119876060.1 peptide ABC transporter substrate-binding protein Regulator
  CHF41_RS03770 amiC 748338..749834 (+) 1497 WP_119876061.1 ABC transporter permease Regulator
  CHF41_RS03775 amiD 749834..750760 (+) 927 WP_119876062.1 oligopeptide ABC transporter permease OppC Regulator
  CHF41_RS03780 amiE 750769..751836 (+) 1068 WP_119876063.1 ABC transporter ATP-binding protein Regulator
  CHF41_RS03785 amiF 751847..752770 (+) 924 WP_119876064.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 39476.21 Da        Isoelectric Point: 4.9512

>NTDB_id=241569 CHF41_RS03780 WP_119876063.1 750769..751836(+) (amiE) [Streptococcus respiraculi strain HTS25]
MTNQKNVILTARDIVVEFDVRDRVLTAIRGVSLELIEGEVLALVGESGSGKSVLTKTFTGMLEDNGRVASGSIDYRGQDL
TALKANKDWAEIRGGKIATIFQDPMTSLDPIKTIGSQIVEVIVKHQGKNPKEAKELAIDYMEKVGIPEAKKRFDEYPFQY
SGGMRQRIVIAIALACRPDILICDEPTTALDVTIQAQIIDLLKSLQQEYHFTTIFITHDLGVVASIADKVAVMYAGEVVE
YGTVEEIFYDPRHPYTWSLLSSLPQLADEKGELYSIPGTPPSLYTPVKGDAFALRSDYAMQIDFEEHPPVFKVSDTHWAK
TWLLHEDAPTVHKPSVIEDLHNKIRSKVGFATIDL

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=241569 CHF41_RS03780 WP_119876063.1 750769..751836(+) (amiE) [Streptococcus respiraculi strain HTS25]
ATGACAAATCAAAAAAATGTAATATTGACTGCTCGCGATATTGTTGTGGAATTTGACGTTCGTGACAGAGTATTGACAGC
CATTCGTGGTGTCTCCCTTGAGTTAATTGAAGGAGAGGTCTTAGCACTTGTAGGTGAGTCAGGATCTGGGAAGTCTGTGT
TGACAAAGACTTTTACAGGGATGCTCGAAGACAATGGTCGTGTAGCAAGCGGAAGCATTGACTACCGTGGTCAAGATTTA
ACAGCTTTAAAAGCGAATAAGGACTGGGCCGAAATCCGTGGCGGAAAGATTGCAACGATTTTCCAAGACCCGATGACAAG
TTTGGATCCAATCAAAACCATCGGTAGCCAAATTGTTGAAGTCATTGTTAAGCACCAAGGCAAAAATCCAAAAGAAGCTA
AGGAATTAGCAATTGATTATATGGAAAAAGTCGGCATTCCTGAAGCGAAGAAACGTTTTGACGAATATCCTTTCCAATAT
TCAGGTGGAATGCGCCAACGGATTGTTATTGCAATTGCCCTTGCCTGCCGTCCAGATATTTTAATCTGTGATGAACCCAC
AACGGCCCTTGATGTGACGATTCAAGCACAGATTATTGACCTCTTAAAATCTTTGCAACAAGAATATCATTTCACAACAA
TCTTCATTACCCATGACCTTGGTGTGGTGGCAAGTATTGCAGATAAGGTTGCGGTGATGTACGCAGGTGAAGTAGTAGAG
TATGGAACAGTAGAAGAAATTTTCTACGACCCTCGTCATCCGTATACATGGAGTCTACTCTCTAGCCTTCCGCAGTTAGC
AGACGAAAAAGGAGAGTTGTATTCTATCCCTGGGACCCCACCGTCGCTTTACACCCCTGTAAAAGGTGATGCATTTGCTC
TTCGTTCTGATTATGCTATGCAGATTGATTTCGAAGAACATCCACCCGTTTTCAAGGTATCAGATACACATTGGGCTAAG
ACCTGGTTGCTTCATGAGGATGCTCCTACAGTTCATAAACCATCTGTGATTGAAGATTTGCATAATAAGATTCGCTCAAA
AGTTGGCTTTGCCACCATAGATTTATAG

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(239-301)

ABC transporter (ABC_tran)

(29-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

86.61

98.873

0.856
  amiE Streptococcus thermophilus LMG 18311

84.33

98.873

0.834
  amiE Streptococcus thermophilus LMD-9

84.33

98.873

0.834
  oppD Streptococcus mutans UA159

55.362

97.183

0.538

Multiple sequence alignment