Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   CHF41_RS03765 Genome accession   NZ_CP022680
Coordinates   746295..748274 (+) Length   659 a.a.
NCBI ID   WP_119876060.1    Uniprot ID   -
Organism   Streptococcus respiraculi strain HTS25     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 741295..753274
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CHF41_RS03755 - 742546..743778 (-) 1233 WP_119876058.1 serine hydrolase -
  CHF41_RS03760 amiA 744140..746101 (+) 1962 WP_119876059.1 peptide ABC transporter substrate-binding protein Regulator
  CHF41_RS03765 amiA3 746295..748274 (+) 1980 WP_119876060.1 peptide ABC transporter substrate-binding protein Regulator
  CHF41_RS03770 amiC 748338..749834 (+) 1497 WP_119876061.1 ABC transporter permease Regulator
  CHF41_RS03775 amiD 749834..750760 (+) 927 WP_119876062.1 oligopeptide ABC transporter permease OppC Regulator
  CHF41_RS03780 amiE 750769..751836 (+) 1068 WP_119876063.1 ABC transporter ATP-binding protein Regulator
  CHF41_RS03785 amiF 751847..752770 (+) 924 WP_119876064.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 659 a.a.        Molecular weight: 72683.39 Da        Isoelectric Point: 4.5052

>NTDB_id=241566 CHF41_RS03765 WP_119876060.1 746295..748274(+) (amiA3) [Streptococcus respiraculi strain HTS25]
MNKRKLLVLAGVSLLSVGVLAACSGSSNSSGGDESVYGYVYGSDPESLDYLTTSKASTLDVVTNGVDGLLENDQFGNLVP
SLAEDWKVSKDGLTYTYKLRKGVNWYTSEGEEYAEVKAQDFVAGLKHAADKKSESLYLIQESIKGLDAYVKGENTDFASV
GIKAVDDYTVQYTLNSPEPYWNSKTTNGILFPVNEEFLTSKGDKFAQPTDPSSILYNGPFLLKSLVSKSSVEFTKNENYW
DKDNVHVDSVKLSYYDGQDVDSLARNFTDGAYSVARLFPSSPNYSKVAEDFKENIFVTQPGVGSNAIGFNIDRQSYEHTS
KTTDEEKNSTKKAFLNKDFRQAINFAFDRKAYSSQVNGEAGAEFAVRNLFVPSDFVSVGEKTFSDVVEEKLISYGDEWKD
VKLADSVNGIYNPEKAKAEFEKAKKALEAEGVKFPIHIDTPVVETSKNYVSRMQSFKQSVESVLGSENVVIDLQMMSEDE
AFNITYYAPNAKAEDWDISGLVGWNPDYSDPSTYLDILESTNPEQTKTFFGFEGADNANAKAVGFDAYNTLANDAGKEVN
DVAARYEKYAAAQAWLTDSSLLLPTMSSSGAAPFLSRIEPFTGASATSGNKSSASYYKYLKVGKDVVTKKQYEEARKKWL
EEKAESNAKAQKDLESHVE

Nucleotide


Download         Length: 1980 bp        

>NTDB_id=241566 CHF41_RS03765 WP_119876060.1 746295..748274(+) (amiA3) [Streptococcus respiraculi strain HTS25]
ATGAATAAAAGGAAATTACTAGTATTAGCGGGCGTGAGCTTGCTAAGCGTTGGGGTACTAGCAGCTTGCTCGGGGAGCTC
GAATTCTTCGGGTGGAGATGAAAGCGTATACGGATATGTGTATGGTTCTGATCCAGAGAGTCTGGACTATTTGACAACCT
CTAAGGCTTCTACGCTTGATGTAGTGACAAATGGCGTGGATGGCTTACTTGAAAATGATCAATTCGGTAACCTTGTCCCA
TCTTTGGCGGAAGATTGGAAAGTCTCTAAAGATGGCTTGACCTATACCTACAAACTTCGTAAAGGTGTTAATTGGTATAC
ATCTGAGGGTGAAGAGTATGCTGAAGTAAAGGCACAAGATTTTGTCGCTGGATTGAAACATGCAGCAGATAAAAAATCAG
AGTCACTCTATTTGATACAAGAATCTATCAAAGGTTTGGATGCATATGTTAAGGGTGAAAATACTGATTTTGCAAGTGTT
GGTATTAAAGCTGTTGATGACTATACAGTTCAGTATACATTGAATAGCCCAGAACCATACTGGAATTCCAAAACAACAAA
TGGAATTTTGTTCCCAGTGAATGAAGAATTCTTGACATCAAAAGGCGATAAATTTGCTCAGCCAACAGATCCAAGTTCTA
TCCTTTACAACGGTCCCTTCCTTTTGAAATCTCTTGTTTCAAAATCATCTGTTGAATTTACTAAAAATGAAAATTACTGG
GATAAAGATAATGTCCATGTGGATAGTGTTAAATTATCTTACTATGATGGACAAGATGTTGATTCGTTAGCTCGTAATTT
CACGGATGGAGCATACTCTGTAGCTCGTCTCTTCCCTTCAAGTCCAAACTATTCTAAAGTAGCTGAAGACTTTAAAGAGA
ATATCTTCGTGACACAACCTGGTGTAGGAAGCAACGCGATTGGATTTAATATCGACCGTCAATCTTACGAACATACTTCT
AAGACGACAGATGAGGAAAAAAATTCTACCAAGAAAGCTTTTCTTAATAAAGACTTCCGTCAAGCAATCAATTTTGCATT
TGACCGCAAAGCATATTCTTCTCAAGTGAATGGTGAAGCTGGGGCAGAATTTGCAGTACGAAATCTCTTTGTCCCATCTG
ATTTTGTGTCTGTAGGTGAAAAGACGTTCAGTGATGTAGTAGAAGAAAAATTGATTTCTTACGGCGATGAGTGGAAAGAT
GTGAAATTAGCTGACTCTGTTAACGGTATTTACAACCCAGAAAAAGCTAAAGCAGAGTTTGAAAAAGCTAAAAAAGCTTT
GGAGGCTGAAGGGGTTAAGTTCCCTATTCACATTGATACACCAGTTGTAGAAACTTCTAAAAACTATGTATCACGTATGC
AGTCATTCAAACAATCTGTTGAAAGTGTGTTGGGGTCAGAAAATGTAGTAATTGATTTGCAAATGATGTCAGAGGATGAA
GCTTTCAACATCACTTACTATGCTCCTAATGCCAAAGCAGAGGATTGGGATATTTCAGGTTTGGTAGGTTGGAATCCAGA
CTACAGTGATCCTTCAACTTACTTGGATATCTTAGAATCAACTAACCCTGAACAAACGAAGACATTCTTTGGTTTCGAAG
GGGCTGACAACGCAAATGCCAAAGCAGTTGGCTTTGATGCATACAATACATTAGCAAATGATGCTGGTAAAGAAGTTAAT
GATGTTGCGGCTCGTTATGAAAAATACGCAGCAGCGCAAGCTTGGTTGACAGATAGCTCGCTCTTACTTCCGACAATGTC
AAGTTCTGGAGCAGCTCCGTTCTTATCAAGAATTGAACCATTCACTGGTGCATCTGCGACAAGCGGTAATAAGAGTTCTG
CTTCATACTACAAATACCTCAAAGTTGGTAAAGATGTAGTTACCAAGAAACAATACGAAGAAGCCCGCAAGAAATGGCTC
GAAGAAAAAGCAGAGTCAAATGCTAAAGCTCAAAAAGACCTTGAAAGTCACGTAGAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(78-520)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

63.636

100

0.637
  amiA3 Streptococcus thermophilus LMG 18311

63.03

100

0.631
  amiA Streptococcus salivarius strain HSISS4

62.367

100

0.624

Multiple sequence alignment