Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA/cflA   Type   Machinery gene
Locus tag   CHF41_RS02140 Genome accession   NZ_CP022680
Coordinates   449207..450523 (+) Length   438 a.a.
NCBI ID   WP_119875821.1    Uniprot ID   -
Organism   Streptococcus respiraculi strain HTS25     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 444207..455523
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CHF41_RS02115 - 444793..445437 (+) 645 WP_119875816.1 response regulator transcription factor -
  CHF41_RS02120 - 445513..446913 (+) 1401 WP_119875817.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -
  CHF41_RS02125 - 446915..447274 (+) 360 WP_119875818.1 S1 RNA-binding domain-containing protein -
  CHF41_RS02130 cysK 447499..448419 (-) 921 WP_119875819.1 cysteine synthase A -
  CHF41_RS02135 - 448508..449140 (-) 633 WP_119875820.1 YigZ family protein -
  CHF41_RS02140 comFA/cflA 449207..450523 (+) 1317 WP_119875821.1 DEAD/DEAH box helicase Machinery gene
  CHF41_RS02145 - 450489..451154 (+) 666 WP_119875822.1 ComF family protein -
  CHF41_RS02150 hpf 451231..451773 (+) 543 WP_119875823.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  CHF41_RS02155 - 451945..452898 (-) 954 WP_119875415.1 IS30 family transposase -

Sequence

Protein


Download         Length: 438 a.a.        Molecular weight: 49587.19 Da        Isoelectric Point: 9.0593

>NTDB_id=241549 CHF41_RS02140 WP_119875821.1 449207..450523(+) (comFA/cflA) [Streptococcus respiraculi strain HTS25]
MTDLANYYGRLFTHHQLTAEERKQAQKVASQVDKACFRCSTVFDDKHRLPNGALYCRECILLGRVRTDEDLYTFPQQAFP
PQNSLKWKGRLTAWQQGISDALRQQFQAKKATLVHAVTGAGKTEMIYHVMADVIDAGGAVCLASPRIDVCLELYKRLQHD
FFCPISLLHEGAEPYFRTPLVIATTHQLLKFYQAFDLVLIDEVDAFPYVDNPILYRAVENAIKEGGVTIFLTATSTNELD
KKVRIGELHRLRLPRRFHGNPLVVPQKVWLSHFEKNLKKSKIPQKLVKKIAEQQKTGFPLLLFLPEIRMGQDFANLLTTY
FPDQGIGFVSSQTENRLEIVGQFRKQEITILVTTTILERGVTFPGVDVFVVEANHYLYTSSSLIQIAGRVGRSMERPTGT
LLFFHNGTNRAIEKAIQEIQLMNKEAGDGQVSTVSAKS

Nucleotide


Download         Length: 1317 bp        

>NTDB_id=241549 CHF41_RS02140 WP_119875821.1 449207..450523(+) (comFA/cflA) [Streptococcus respiraculi strain HTS25]
ATGACAGATTTAGCAAATTACTATGGACGGTTGTTTACCCACCACCAATTGACAGCAGAAGAGCGCAAGCAAGCTCAGAA
GGTAGCAAGTCAAGTTGACAAGGCCTGTTTTCGTTGTTCAACTGTTTTTGATGACAAGCATCGTCTGCCAAATGGCGCCC
TGTATTGTAGAGAGTGCATATTACTCGGACGCGTGCGGACGGATGAAGATTTATATACATTTCCCCAGCAAGCCTTTCCA
CCACAAAATTCTTTAAAATGGAAAGGACGGTTGACTGCATGGCAGCAGGGAATTTCAGATGCGCTTCGGCAACAATTTCA
AGCTAAAAAAGCTACCTTAGTTCATGCTGTGACAGGAGCTGGTAAAACTGAAATGATCTATCATGTCATGGCAGATGTGA
TTGATGCAGGCGGTGCGGTTTGCTTAGCTAGTCCACGGATTGATGTTTGCCTCGAGTTGTATAAGCGTTTGCAGCATGAT
TTTTTCTGTCCGATTAGTCTGTTACATGAGGGAGCAGAACCTTACTTTCGCACGCCACTTGTGATTGCAACCACACATCA
ACTGCTGAAATTTTATCAGGCGTTTGACTTGGTCTTGATTGATGAGGTGGATGCCTTTCCCTATGTGGATAATCCCATAC
TTTATCGTGCAGTAGAAAATGCTATCAAAGAAGGTGGTGTGACCATATTTTTGACTGCTACTTCGACGAATGAATTGGAT
AAAAAAGTTCGTATTGGAGAACTGCACCGCCTCCGACTACCCCGACGCTTTCATGGGAATCCCCTAGTCGTTCCGCAAAA
GGTATGGCTCTCTCATTTTGAAAAGAATCTAAAGAAGAGCAAAATCCCCCAAAAATTGGTAAAGAAAATAGCAGAGCAAC
AAAAAACAGGCTTTCCTCTCCTCCTTTTTCTACCGGAAATTCGTATGGGGCAAGACTTTGCTAATCTATTGACAACCTAT
TTTCCAGACCAGGGCATTGGCTTTGTCTCCAGTCAGACCGAAAATCGTCTTGAAATCGTGGGACAATTCCGCAAGCAGGA
AATCACCATACTTGTCACGACCACTATTTTAGAACGTGGGGTCACTTTTCCAGGTGTCGATGTTTTTGTAGTAGAGGCTA
ATCACTACCTCTATACCTCGTCCTCCCTCATTCAGATTGCCGGACGAGTAGGCCGAAGTATGGAGCGGCCAACAGGGACC
TTGCTCTTTTTTCATAATGGAACCAATCGTGCGATTGAAAAAGCTATTCAAGAAATTCAGCTAATGAATAAGGAGGCAGG
CGATGGTCAGGTGTCTACTGTGTCAGCAAAGTCTTAA

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(91-207)

Helicase conserved C-terminal domain (Helicase_C)

(290-392)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA/cflA Streptococcus pneumoniae Rx1

65.258

97.26

0.635
  comFA/cflA Streptococcus pneumoniae D39

65.258

97.26

0.635
  comFA/cflA Streptococcus pneumoniae R6

65.258

97.26

0.635
  comFA/cflA Streptococcus pneumoniae TIGR4

65.258

97.26

0.635
  comFA/cflA Streptococcus mitis NCTC 12261

65.023

97.26

0.632
  comFA/cflA Streptococcus mitis SK321

64.789

97.26

0.63
  comFA Lactococcus lactis subsp. cremoris KW2

52.417

89.726

0.47
  comFA Latilactobacillus sakei subsp. sakei 23K

41.73

89.726

0.374

Multiple sequence alignment