Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilB/pilB1   Type   Machinery gene
Locus tag   SYC_RS10760 Genome accession   NC_006576
Coordinates   2167506..2169506 (+) Length   666 a.a.
NCBI ID   WP_011244332.1    Uniprot ID   -
Organism   Synechococcus elongatus PCC 6301     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2162506..2174506
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SYC_RS10740 (syc2018_c) - 2163014..2163265 (-) 252 WP_011244328.1 sulfurtransferase TusA family protein -
  SYC_RS10745 (syc2019_c) dnaJ 2163262..2164392 (-) 1131 WP_011244329.1 molecular chaperone DnaJ -
  SYC_RS10750 (syc2020_c) dnaK 2164534..2166501 (-) 1968 WP_011244330.1 molecular chaperone DnaK -
  SYC_RS10755 (syc2021_c) grpE 2166606..2167229 (-) 624 WP_011378302.1 nucleotide exchange factor GrpE -
  SYC_RS10760 (syc2022_d) pilB/pilB1 2167506..2169506 (+) 2001 WP_011244332.1 GspE/PulE family protein Machinery gene
  SYC_RS10765 (syc2023_d) pilT 2169577..2170665 (+) 1089 WP_011244333.1 type IV pilus twitching motility protein PilT Machinery gene
  SYC_RS10770 (syc2024_d) - 2170690..2171922 (+) 1233 WP_011244334.1 type II secretion system F family protein -
  SYC_RS10775 (syc2025_d) - 2171928..2172482 (+) 555 WP_011244335.1 hypothetical protein -
  SYC_RS10780 (syc2026_c) - 2172447..2173694 (-) 1248 WP_011244336.1 NAD(P)/FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 666 a.a.        Molecular weight: 74162.74 Da        Isoelectric Point: 5.1393

>NTDB_id=24154 SYC_RS10760 WP_011244332.1 2167506..2169506(+) (pilB/pilB1) [Synechococcus elongatus PCC 6301]
MPDQPISPRYALIALNQFSSFGNKLVQAGFVDPEQLQTALVESRRSGQSLPQVISALTGQSLPPELMQQYRRQQLFELKI
LHGVESLNPDQGQYSEEVIHELIADLVPIETCRRHQLVPLERHEAPPRAVVAMVDPNNLDALDELNRLLRPRGYTLQRLV
ITLEDHERLIAGYLDQQLERQQAMQAKQLGDFSEELANLDNLELTEISVQEEDLAKALQEADDAPIVSLANKILLKALTE
GASDIHVEPQEDGLRVRLRRDGVLHQEFGTLPKKIQPALTSRLKIMANLDIAERRVPQDGRIRRMFQGRKIDFRVNSLPS
HFGEKICMRLLDNSATQLGLDQLITDEEALALVRDMGSRPYGLILVTGPTGSGKSTSLYSLLAERNDPAININTAEDPIE
YTLPGLTQVQVLREKGMNFASILRAFMRQDPDVILVGETRDLETARTAIEAALTGHLVLTTLHANDAPSAIARLSEMGVE
PYLVSGSLIGVVSQRLMRRVCPDCRVPYTPNPEELGRYGLSASQELDVTFYKAKTLTSDSLAQARSQGQVCRTCRGTGYK
GRVGVYEVMRVNEVLQVAINQGLPTERLKEIAVEQGMKTLLSYSLELVRQGYTTFEEVDRVTFTDSGVEAELKAKRKLGL
TCNACGAGLQPEWLDCPYCLTPRFGN

Nucleotide


Download         Length: 2001 bp        

>NTDB_id=24154 SYC_RS10760 WP_011244332.1 2167506..2169506(+) (pilB/pilB1) [Synechococcus elongatus PCC 6301]
ATGCCAGACCAACCGATCTCTCCCCGTTACGCCCTGATTGCCCTCAATCAGTTTTCATCGTTTGGTAACAAGCTGGTTCA
AGCGGGCTTTGTCGATCCCGAGCAACTACAGACAGCCCTGGTGGAAAGTCGCCGCAGCGGCCAGTCGCTGCCTCAAGTGA
TCTCAGCCCTCACTGGCCAGTCTTTGCCCCCCGAACTGATGCAGCAGTATCGGCGGCAGCAGTTGTTTGAACTCAAAATT
CTGCACGGGGTCGAGTCGCTTAACCCAGACCAGGGGCAGTACTCCGAAGAGGTCATCCACGAGCTGATCGCTGACTTAGT
GCCGATCGAAACCTGTCGCCGTCATCAACTCGTCCCCCTCGAACGCCATGAAGCGCCGCCGCGAGCCGTGGTCGCTATGG
TCGACCCCAATAACCTCGATGCCTTGGACGAACTCAACCGGCTACTGCGACCCAGGGGCTACACCCTACAGCGGCTCGTG
ATTACCCTCGAGGATCACGAACGGCTGATTGCGGGCTATCTGGATCAGCAGCTGGAACGTCAGCAGGCTATGCAAGCCAA
GCAGCTGGGGGATTTTTCCGAGGAGCTTGCGAACCTCGACAACTTAGAACTGACGGAAATTTCAGTCCAAGAAGAGGATC
TTGCCAAGGCGTTGCAAGAGGCCGATGATGCGCCGATCGTGAGTCTCGCTAACAAAATCCTGCTGAAGGCTTTGACGGAA
GGCGCTTCCGATATCCACGTCGAGCCCCAGGAAGACGGGCTACGAGTGCGACTGCGACGAGATGGAGTCTTGCACCAAGA
ATTTGGGACGCTTCCCAAAAAAATTCAACCCGCCCTGACCTCTCGGCTAAAGATCATGGCCAATCTGGACATCGCCGAGC
GGCGGGTCCCTCAAGATGGCCGCATTCGACGCATGTTCCAAGGCCGCAAGATCGACTTCCGGGTCAACAGCCTCCCTAGT
CACTTCGGTGAAAAGATTTGTATGCGGTTGCTGGACAACTCAGCAACCCAATTGGGTTTAGACCAGTTGATTACTGATGA
AGAAGCGTTGGCCTTGGTGCGTGACATGGGTAGTCGCCCCTATGGTCTCATTCTCGTAACAGGCCCTACGGGGTCTGGAA
AGTCGACGAGCCTGTACTCGCTGCTGGCGGAGCGCAATGATCCGGCGATCAATATCAACACCGCTGAAGACCCGATCGAG
TACACCTTGCCCGGGCTGACCCAAGTGCAGGTTCTCCGGGAGAAAGGCATGAACTTTGCCTCAATTCTCCGGGCCTTCAT
GCGGCAGGATCCCGATGTGATTCTGGTGGGTGAAACGCGCGATTTGGAAACGGCCCGCACGGCGATTGAAGCGGCCTTGA
CCGGCCACTTAGTCTTGACAACCCTGCATGCGAACGATGCTCCGAGTGCGATCGCGAGGCTGAGTGAAATGGGAGTGGAG
CCCTACCTAGTCTCGGGGTCACTGATTGGGGTGGTCTCGCAACGTTTGATGCGCCGCGTCTGCCCCGACTGTCGTGTTCC
CTACACCCCCAACCCAGAAGAACTAGGTCGCTATGGACTGTCGGCGAGTCAGGAGCTGGATGTCACCTTTTATAAGGCCA
AAACATTGACGTCGGATTCGCTGGCTCAGGCGCGATCGCAGGGACAGGTTTGCAGAACTTGTCGTGGGACTGGCTACAAG
GGCCGCGTCGGGGTTTATGAGGTGATGCGGGTCAATGAAGTGCTTCAGGTGGCGATCAACCAAGGACTCCCGACTGAACG
CCTCAAGGAAATTGCGGTGGAGCAGGGGATGAAAACCTTACTCTCCTACAGCTTGGAGTTGGTCCGTCAGGGATACACCA
CCTTTGAGGAAGTTGACCGGGTGACCTTTACCGATTCTGGCGTGGAGGCCGAACTCAAGGCCAAGCGCAAACTAGGCCTG
ACCTGCAACGCCTGTGGGGCGGGTCTGCAACCCGAATGGCTGGACTGCCCCTATTGTCTGACGCCCCGCTTTGGGAACTA
A

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein E, N-terminal domain (MshEN)

(25-178)

Type II/IV secretion system protein (T2SSE)

(232-499)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilB/pilB1 Synechocystis sp. PCC 6803

60.85

98.949

0.602

Multiple sequence alignment