Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   CIC07_RS25015 Genome accession   NZ_CP022655
Coordinates   5547873..5548448 (-) Length   191 a.a.
NCBI ID   WP_021878898.1    Uniprot ID   A0AAC9VAA0
Organism   Paenibacillus sp. RUD330     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5542873..5553448
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CIC07_RS24985 (CIC07_16800) - 5543006..5543416 (-) 411 WP_076357182.1 CBS domain-containing protein -
  CIC07_RS24990 (CIC07_16805) - 5543445..5544566 (-) 1122 WP_076357180.1 LCP family protein -
  CIC07_RS24995 (CIC07_16810) - 5544758..5545111 (+) 354 WP_076357178.1 DUF4870 domain-containing protein -
  CIC07_RS25000 (CIC07_16815) - 5545117..5545878 (-) 762 WP_076357176.1 DUF1836 domain-containing protein -
  CIC07_RS25005 (CIC07_16820) - 5546118..5547458 (+) 1341 WP_076357174.1 hemolysin family protein -
  CIC07_RS25010 (CIC07_16825) rpsR 5547574..5547852 (-) 279 WP_076357172.1 30S ribosomal protein S18 -
  CIC07_RS25015 (CIC07_16830) ssbA 5547873..5548448 (-) 576 WP_021878898.1 single-stranded DNA-binding protein Machinery gene
  CIC07_RS25020 (CIC07_16835) rpsF 5548482..5548766 (-) 285 WP_076357170.1 30S ribosomal protein S6 -
  CIC07_RS25025 (CIC07_16840) - 5549141..5549326 (+) 186 WP_021878901.1 YjzC family protein -
  CIC07_RS25035 (CIC07_16850) - 5549957..5550187 (-) 231 WP_076357168.1 DUF951 domain-containing protein -
  CIC07_RS25040 (CIC07_16855) - 5550274..5551353 (-) 1080 WP_076357166.1 mechanosensitive ion channel family protein -
  CIC07_RS25045 (CIC07_16860) - 5551456..5551695 (-) 240 WP_076357164.1 DUF3343 domain-containing protein -
  CIC07_RS25050 (CIC07_16865) yyaC 5551841..5552431 (+) 591 WP_076357162.1 spore protease YyaC -
  CIC07_RS25055 (CIC07_16870) - 5552406..5552912 (-) 507 WP_076357160.1 DUF4446 family protein -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 19985.57 Da        Isoelectric Point: 4.8453

>NTDB_id=241380 CIC07_RS25015 WP_021878898.1 5547873..5548448(-) (ssbA) [Paenibacillus sp. RUD330]
MLNRVILIGRLTKDPELRYTPSGVAVTQFTLAVDRPFNSQSGEREADFIPIVTWRQLAETCANYLRKGRLTAVEGRMQVR
NYENNEGKRVYVTEIIADNVRFLESGNRDGGSREEGSYNAGGSGGYSGGSGNGGGSGSSGGGYGGGQSSGGNQGGGSYGG
NRGGGGGSQGNRDPFSDDGRPIDISEDDLPF

Nucleotide


Download         Length: 576 bp        

>NTDB_id=241380 CIC07_RS25015 WP_021878898.1 5547873..5548448(-) (ssbA) [Paenibacillus sp. RUD330]
ATGTTGAACCGTGTCATTCTGATTGGCAGATTGACCAAAGATCCAGAACTTCGCTATACCCCATCCGGCGTTGCGGTAAC
GCAATTCACGCTGGCGGTAGACCGGCCCTTCAACAGCCAGTCCGGGGAACGCGAAGCCGATTTCATTCCGATTGTCACGT
GGAGGCAGCTTGCCGAGACGTGCGCCAACTATCTGCGCAAAGGCCGTCTGACGGCGGTTGAAGGCCGGATGCAGGTAAGG
AACTACGAGAACAATGAAGGCAAGCGCGTCTATGTGACGGAGATTATTGCCGACAATGTCCGTTTCCTTGAATCCGGTAA
CCGCGATGGCGGTTCGCGTGAAGAAGGCTCGTACAATGCAGGAGGAAGCGGCGGCTACAGCGGTGGAAGCGGCAATGGCG
GCGGAAGCGGCAGCAGCGGTGGCGGATACGGCGGCGGCCAGTCGAGCGGCGGCAACCAAGGCGGAGGTTCCTACGGGGGC
AATCGCGGCGGTGGTGGAGGTTCTCAGGGAAACCGGGATCCATTCTCGGATGACGGACGCCCCATCGACATCTCCGAAGA
TGATTTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

53.927

100

0.539
  ssb Latilactobacillus sakei subsp. sakei 23K

45.026

100

0.45

Multiple sequence alignment