Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   ECRM9975_RS02695 Genome accession   NZ_CP028432
Coordinates   538234..538839 (+) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain RM9975     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 533234..543839
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ECRM9975_RS02660 (ECRM9975_02660) rsmS 533939..534100 (-) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -
  ECRM9975_RS02665 (ECRM9975_02665) priC 534114..534641 (-) 528 WP_000844848.1 primosomal replication protein N'' -
  ECRM9975_RS02670 (ECRM9975_02670) ybaN 534711..535088 (+) 378 WP_001188905.1 DUF454 family protein -
  ECRM9975_RS02680 (ECRM9975_02680) apt 535241..535792 (+) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  ECRM9975_RS02685 (ECRM9975_02685) dnaX 535921..537852 (+) 1932 WP_000122008.1 DNA polymerase III subunit gamma/tau -
  ECRM9975_RS02690 (ECRM9975_02690) ybaB 537905..538234 (+) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  ECRM9975_RS02695 (ECRM9975_02695) recR 538234..538839 (+) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  ECRM9975_RS02700 (ECRM9975_02700) htpG 538949..540823 (+) 1875 WP_000678194.1 molecular chaperone HtpG -
  ECRM9975_RS02710 (ECRM9975_02710) adk 541004..541648 (+) 645 WP_001220233.1 adenylate kinase -
  ECRM9975_RS02715 (ECRM9975_02715) hemH 541884..542846 (+) 963 WP_001250125.1 ferrochelatase -
  ECRM9975_RS02720 (ECRM9975_02720) aes 542843..543802 (-) 960 WP_000801832.1 acetyl esterase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=241380 ECRM9975_RS02695 WP_001195025.1 538234..538839(+) (recR) [Escherichia coli strain RM9975]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=241380 ECRM9975_RS02695 WP_001195025.1 538234..538839(+) (recR) [Escherichia coli strain RM9975]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGTGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGGCACCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGCCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443

Multiple sequence alignment