Detailed information NTG0241306

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: CHN56_RS08930
• Genome accession: NZ_CP022654
• Coordinates: 1806220..1807368 (-)
• Length: 382 a.a.
• NCBI ID: WP_003156336.1
• Uniprot ID: -
• Organism: Bacillus velezensis strain SCDB 291
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 1801220..1812368

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CHN56_RS08900 (CHN56_01766)	-	1801356..1802114 (-)	759	WP_022552588.1	ABC transporter ATP-binding protein	-
CHN56_RS08905 (CHN56_01767)	-	1802108..1803055 (-)	948	WP_014416905.1	iron chelate uptake ABC transporter family permease subunit	-
CHN56_RS08910 (CHN56_01768)	ceuB	1803045..1803998 (-)	954	WP_003156332.1	ABC transporter permease	Machinery gene
CHN56_RS08915 (CHN56_01769)	-	1804413..1805777 (+)	1365	WP_070081361.1	aspartate kinase	-
CHN56_RS08920	-	1805872..1805967 (+)	96	WP_012116800.1	YjcZ family sporulation protein	-
CHN56_RS08925 (CHN56_01770)	phrC	1806117..1806236 (-)	120	WP_003156334.1	PhrC/PhrF family phosphatase-inhibitory pheromone	Regulator
CHN56_RS08930 (CHN56_01771)	rapC	1806220..1807368 (-)	1149	WP_003156336.1	Rap family tetratricopeptide repeat protein	Regulator
CHN56_RS08935 (CHN56_01772)	-	1807521..1808954 (-)	1434	WP_161941456.1	HAMP domain-containing sensor histidine kinase	-
CHN56_RS08940 (CHN56_01773)	-	1808941..1809624 (-)	684	WP_094247243.1	response regulator transcription factor	-
CHN56_RS08945 (CHN56_01774)	-	1809837..1811273 (+)	1437	WP_094247244.1	ABC transporter permease	-
CHN56_RS08950 (CHN56_01775)	-	1811288..1811971 (+)	684	WP_025853762.1	ABC transporter ATP-binding protein	-

Sequence

Protein

• Length: 382 a.a.
• Molecular weight: 45521.82 Da
• Isoelectric Point: 5.0732

>NTDB_id=241306 CHN56_RS08930 WP_003156336.1 1806220..1807368(-) (rapC) [Bacillus velezensis strain SCDB 291]
MKSGLIPSSAVGQKINEWYRYIRTFSVPDAEILKAEIKQELDRMEPDSNLVLYYSLMEFRHQLMLDYLEPLEKLKIEDQP
TLSEILDNIDNSQAGLKGLLDYYVNFFKGMFEFDKREFISAITYYKQAEKKLAFVSDHVERAEFYFKVAEAYYHMKQTYF
SLIHIKNAYEIYVEQDTYNVRIIQCHFVFGVNLMDERRFEQAAKHFQHALQMAEKEQKAQLVGRALYNLGLCYYNQDRIG
EAIPYFERAVDTFESQRIVNSLPQAYFLITLIYFKLGKKEKASEYHKRGYEYAKETDDPVYTVKFEWLQALYQAKPDEEK
ISACFRYLEDKNLYADIEDLALEAAKYYYEQNCFKISSDYFLKVEEARKQIQRSEGLYEIEI

Nucleotide

• Length: 1149 bp

>NTDB_id=241306 CHN56_RS08930 WP_003156336.1 1806220..1807368(-) (rapC) [Bacillus velezensis strain SCDB 291]
ATGAAGAGCGGGTTAATTCCTTCTTCAGCAGTCGGGCAGAAAATTAACGAGTGGTATCGATACATCAGAACATTCAGCGT
GCCGGATGCGGAGATCTTGAAGGCCGAGATCAAACAAGAGCTTGACCGTATGGAGCCTGATTCAAACTTAGTGCTTTATT
ATTCCCTCATGGAATTTCGCCATCAGCTGATGCTGGACTACTTGGAGCCGCTGGAAAAACTGAAGATAGAAGACCAGCCG
ACCCTGTCGGAAATTCTTGATAACATTGATAACAGCCAGGCCGGCCTCAAAGGGCTTCTCGATTATTACGTCAACTTTTT
CAAAGGCATGTTTGAATTTGATAAAAGAGAATTTATCTCAGCGATTACGTATTATAAACAAGCTGAGAAAAAACTGGCCT
TCGTATCGGACCACGTGGAACGGGCGGAGTTTTATTTTAAAGTGGCCGAAGCTTATTATCATATGAAACAAACGTATTTT
TCTTTGATACATATAAAAAACGCTTATGAAATTTACGTAGAGCAAGACACATATAACGTCCGGATCATTCAATGCCATTT
TGTATTCGGCGTCAATTTAATGGATGAAAGGCGCTTTGAACAGGCGGCCAAACATTTTCAGCACGCTTTGCAAATGGCCG
AAAAAGAACAAAAAGCGCAGCTTGTCGGGAGGGCGCTGTATAACCTCGGACTGTGCTACTACAATCAGGACCGCATCGGC
GAAGCGATTCCGTACTTTGAACGGGCGGTTGATACATTTGAATCACAAAGAATCGTCAATTCTCTTCCTCAAGCATATTT
CCTAATCACACTCATTTACTTTAAACTCGGAAAAAAAGAAAAAGCGTCGGAATATCACAAGCGGGGATATGAATATGCTA
AAGAAACAGACGATCCCGTTTACACGGTAAAATTCGAATGGCTGCAGGCTCTGTATCAGGCGAAACCGGACGAGGAAAAA
ATCAGCGCATGTTTCCGTTACCTGGAAGATAAAAATTTATACGCCGATATAGAGGATTTAGCACTAGAAGCAGCTAAATA
TTACTATGAACAAAATTGCTTTAAGATTTCTTCTGACTATTTTCTGAAAGTCGAAGAGGCAAGGAAACAAATACAAAGGA
GTGAGGGTTTGTATGAAATTGAAATCTAA

Domains

Predicted by InterproScan.

• Tetratricopeptide repeat (TPR_12) (223-294)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (6-66)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	82.199	100	0.822
rapF	Bacillus subtilis subsp. subtilis str. 168	57.105	99.476	0.568