Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   BaGK_RS13215 Genome accession   NZ_CP022653
Coordinates   2719131..2719466 (+) Length   111 a.a.
NCBI ID   WP_003153104.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain GQJK17     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2714131..2724466
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BaGK_RS13195 (BaGK_13195) gcvT 2714694..2715788 (-) 1095 WP_094232409.1 glycine cleavage system aminomethyltransferase GcvT -
  BaGK_RS13200 (BaGK_13200) - 2716249..2717919 (+) 1671 WP_094232410.1 DEAD/DEAH box helicase -
  BaGK_RS13205 (BaGK_13205) - 2717940..2718734 (+) 795 WP_094232411.1 YqhG family protein -
  BaGK_RS13210 (BaGK_13210) sinI 2718924..2719097 (+) 174 WP_094232412.1 anti-repressor SinI Regulator
  BaGK_RS13215 (BaGK_13215) sinR 2719131..2719466 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  BaGK_RS13220 (BaGK_13220) tasA 2719660..2720442 (-) 783 WP_063638541.1 biofilm matrix protein TasA -
  BaGK_RS13225 (BaGK_13225) sipW 2720506..2721078 (-) 573 WP_094233201.1 signal peptidase I SipW -
  BaGK_RS13230 (BaGK_13230) tapA 2721062..2721763 (-) 702 WP_094232413.1 amyloid fiber anchoring/assembly protein TapA -
  BaGK_RS13235 (BaGK_13235) - 2722025..2722348 (+) 324 WP_003325436.1 DUF3889 domain-containing protein -
  BaGK_RS13240 (BaGK_13240) - 2722395..2722574 (-) 180 WP_003325435.1 YqzE family protein -
  BaGK_RS13245 (BaGK_13245) comGG 2722644..2723018 (-) 375 WP_088117569.1 competence type IV pilus minor pilin ComGG Machinery gene
  BaGK_RS13250 (BaGK_13250) comGF 2723019..2723414 (-) 396 WP_309484978.1 competence type IV pilus minor pilin ComGF Machinery gene
  BaGK_RS13255 (BaGK_13255) comGE 2723428..2723775 (-) 348 WP_094232414.1 competence type IV pilus minor pilin ComGE Machinery gene
  BaGK_RS13260 (BaGK_13260) comGD 2723759..2724199 (-) 441 WP_094232415.1 competence type IV pilus minor pilin ComGD Machinery gene
  BaGK_RS13265 (BaGK_13265) comGC 2724189..2724455 (-) 267 WP_047937532.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12972.64 Da        Isoelectric Point: 7.2023

>NTDB_id=241240 BaGK_RS13215 WP_003153104.1 2719131..2719466(+) (sinR) [Bacillus atrophaeus strain GQJK17]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=241240 BaGK_RS13215 WP_003153104.1 2719131..2719466(+) (sinR) [Bacillus atrophaeus strain GQJK17]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAAACAAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCTATGACATCCGGGGTTTCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

99.099

100

0.991

Multiple sequence alignment