Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinI   Type   Regulator
Locus tag   BaGK_RS13210 Genome accession   NZ_CP022653
Coordinates   2718924..2719097 (+) Length   57 a.a.
NCBI ID   WP_094232412.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain GQJK17     
Function   inhibit the expression of sinR (predicted from homology)   
Competence regulation

Genomic Context

Location: 2713924..2724097
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BaGK_RS13195 (BaGK_13195) gcvT 2714694..2715788 (-) 1095 WP_094232409.1 glycine cleavage system aminomethyltransferase GcvT -
  BaGK_RS13200 (BaGK_13200) - 2716249..2717919 (+) 1671 WP_094232410.1 DEAD/DEAH box helicase -
  BaGK_RS13205 (BaGK_13205) - 2717940..2718734 (+) 795 WP_094232411.1 YqhG family protein -
  BaGK_RS13210 (BaGK_13210) sinI 2718924..2719097 (+) 174 WP_094232412.1 anti-repressor SinI Regulator
  BaGK_RS13215 (BaGK_13215) sinR 2719131..2719466 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  BaGK_RS13220 (BaGK_13220) tasA 2719660..2720442 (-) 783 WP_063638541.1 biofilm matrix protein TasA -
  BaGK_RS13225 (BaGK_13225) sipW 2720506..2721078 (-) 573 WP_094233201.1 signal peptidase I SipW -
  BaGK_RS13230 (BaGK_13230) tapA 2721062..2721763 (-) 702 WP_094232413.1 amyloid fiber anchoring/assembly protein TapA -
  BaGK_RS13235 (BaGK_13235) - 2722025..2722348 (+) 324 WP_003325436.1 DUF3889 domain-containing protein -
  BaGK_RS13240 (BaGK_13240) - 2722395..2722574 (-) 180 WP_003325435.1 YqzE family protein -
  BaGK_RS13245 (BaGK_13245) comGG 2722644..2723018 (-) 375 WP_088117569.1 competence type IV pilus minor pilin ComGG Machinery gene
  BaGK_RS13250 (BaGK_13250) comGF 2723019..2723414 (-) 396 WP_309484978.1 competence type IV pilus minor pilin ComGF Machinery gene
  BaGK_RS13255 (BaGK_13255) comGE 2723428..2723775 (-) 348 WP_094232414.1 competence type IV pilus minor pilin ComGE Machinery gene

Sequence

Protein


Download         Length: 57 a.a.        Molecular weight: 6817.90 Da        Isoelectric Point: 10.4757

>NTDB_id=241239 BaGK_RS13210 WP_094232412.1 2718924..2719097(+) (sinI) [Bacillus atrophaeus strain GQJK17]
MKNAKKEFLELDQEWVELMKRAREANINPEEIRKYLNLHKKSARPVPATRSHTINPF

Nucleotide


Download         Length: 174 bp        

>NTDB_id=241239 BaGK_RS13210 WP_094232412.1 2718924..2719097(+) (sinI) [Bacillus atrophaeus strain GQJK17]
ATGAAAAATGCAAAAAAAGAGTTTTTAGAATTAGATCAAGAATGGGTTGAATTAATGAAAAGAGCCAGAGAAGCAAATAT
CAACCCGGAGGAGATACGCAAATATTTAAATTTGCATAAAAAGTCTGCTCGTCCTGTCCCAGCCACCAGAAGTCATACCA
TAAATCCTTTCTGA

Domains

Predicted by InterproScan.

Anti-repressor SinI (SinI)

(11-37)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinI Bacillus subtilis subsp. subtilis str. 168

77.193

100

0.772

Multiple sequence alignment