Detailed information NTG0241173

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: SM12261_RS09325
• Genome accession: NZ_CP028414
• Coordinates: 1851822..1852919 (+)
• Length: 365 a.a.
• NCBI ID: WP_000266646.1
• Uniprot ID: -
• Organism: Streptococcus mitis NCTC 12261
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1846822..1857919

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SM12261_RS09300 (SM12261_1794)	pgsA	1847337..1847882 (-)	546	WP_000712123.1	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-
SM12261_RS09305 (SM12261_1795)	rodZ	1847893..1848720 (-)	828	WP_001227984.1	cytoskeleton protein RodZ	-
SM12261_RS09310 (SM12261_1796)	yfmH	1848762..1850045 (-)	1284	WP_000170225.1	EF-P 5-aminopentanol modification-associated protein YfmH	-
SM12261_RS09315 (SM12261_1797)	yfmF	1850042..1851292 (-)	1251	WP_000424291.1	EF-P 5-aminopentanol modification-associated protein YfmF	-
SM12261_RS09320 (SM12261_1798)	yaaA	1851451..1851819 (+)	369	WP_000455896.1	S4 domain-containing protein YaaA	-
SM12261_RS09325 (SM12261_1799)	recF	1851822..1852919 (+)	1098	WP_000266646.1	DNA replication/repair protein RecF	Machinery gene
SM12261_RS09330 (SM12261_1800)	guaB	1852971..1854449 (-)	1479	WP_000073419.1	IMP dehydrogenase	-
SM12261_RS09335 (SM12261_1801)	trpS	1854601..1855626 (-)	1026	WP_000165449.1	tryptophan--tRNA ligase	-
SM12261_RS09340 (SM12261_1802)	-	1855832..1857454 (+)	1623	WP_000958774.1	ATP-binding cassette domain-containing protein	-

Sequence

Protein

• Length: 365 a.a.
• Molecular weight: 42036.13 Da
• Isoelectric Point: 8.1471

>NTDB_id=241173 SM12261_RS09325 WP_000266646.1 1851822..1852919(+) (recF) [Streptococcus mitis NCTC 12261]
MWLQHLSLKTFRNYKETKIDFNPKLNIFLGRNAQGKTNILEAIYFLALTRSHRTRTDKNLIHFDEEQLHLSGLVQKKTGS
IPLEIELTQKGRVTKVNHLKQARLSDYVGHMNVVLFAPEDLQLIKGAPSVRRKFIDMELGQIKPIYLSDLTNYNHILKQR
NTYLKSAQKIDETFLSVLDDQLVDYGCRVMNHRLDFIKKLEHFGRKKHFELSNQIEELSISYQSSVKSTEKEDLSESFKI
ALEKSRSRDLFKKNTGVGPHRDDISFYINGMDASFGSQGQHRSLVLSIKLAEIELMESITTESPILLLDDVMSELDNTRQ
LKLLETISQSIQTFITTTSLDHLQNLPENLSIFTIQDGKVAVNEN

Nucleotide

• Length: 1098 bp

>NTDB_id=241173 SM12261_RS09325 WP_000266646.1 1851822..1852919(+) (recF) [Streptococcus mitis NCTC 12261]
ATGTGGCTACAACACCTATCTCTCAAAACTTTTCGTAACTACAAAGAGACGAAAATAGACTTTAATCCTAAATTAAATAT
CTTTTTAGGACGCAATGCTCAAGGAAAAACAAATATACTAGAGGCTATCTATTTTTTAGCCTTAACTCGTAGTCATCGAA
CTCGAACAGATAAAAATCTCATTCATTTTGATGAGGAACAACTTCATCTTTCAGGTCTAGTTCAGAAAAAAACTGGATCC
ATTCCCCTAGAAATAGAACTAACACAAAAAGGCCGTGTGACAAAAGTTAATCATTTAAAACAGGCACGCCTTTCAGATTA
TGTAGGACACATGAATGTTGTCTTATTTGCTCCTGAAGATTTACAACTAATTAAAGGAGCACCTTCAGTTCGACGAAAAT
TTATTGATATGGAGCTTGGGCAAATTAAGCCAATCTATTTATCAGATTTAACCAATTATAACCATATTCTTAAGCAAAGA
AATACCTATTTAAAATCAGCTCAAAAAATAGATGAAACCTTCCTTTCAGTACTAGATGATCAGCTAGTCGATTATGGATG
TCGTGTAATGAATCACCGCTTAGATTTTATAAAAAAACTAGAGCATTTTGGTCGTAAGAAACATTTTGAACTTTCTAATC
AGATTGAAGAGTTGTCAATATCCTATCAATCTTCTGTAAAGTCAACTGAAAAAGAAGACTTATCAGAATCTTTCAAAATT
GCTTTAGAAAAAAGTAGGTCCAGAGATTTATTTAAAAAGAATACTGGTGTTGGGCCTCATCGAGATGACATTTCTTTTTA
TATAAATGGGATGGATGCTAGTTTCGGAAGTCAAGGCCAACATCGTAGTCTCGTCCTCTCGATAAAATTAGCAGAAATCG
AATTAATGGAAAGTATTACTACAGAATCTCCGATATTATTACTTGACGATGTCATGAGTGAACTTGACAACACTAGACAG
TTAAAATTATTAGAAACGATTTCTCAGTCAATCCAAACCTTTATAACAACAACAAGCTTAGATCATCTTCAAAATTTGCC
AGAAAATCTAAGTATCTTCACTATTCAGGATGGTAAAGTTGCTGTAAATGAAAATTGA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (3-358)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Streptococcus pneumoniae R6	96.712	100	0.967
recF	Bacillus subtilis subsp. subtilis str. 168	45.528	100	0.46