Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   Sp14A_RS09145 Genome accession   NZ_CP022601
Coordinates   1787514..1788002 (-) Length   162 a.a.
NCBI ID   WP_104968488.1    Uniprot ID   A0A2L0D669
Organism   Streptococcus pluranimalium strain 14A0014     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1782514..1793002
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Sp14A_RS09125 (Sp14A_18880) - 1782987..1784332 (+) 1346 WP_205407077.1 IS3 family transposase -
  Sp14A_RS09130 (Sp14A_18890) - 1784381..1785673 (-) 1293 WP_115130772.1 citrate:proton symporter -
  Sp14A_RS09135 (Sp14A_18900) - 1785683..1786684 (-) 1002 WP_115130773.1 isocitrate/isopropylmalate dehydrogenase family protein -
  Sp14A_RS09140 (Sp14A_18910) rpsR 1787237..1787476 (-) 240 WP_000068665.1 30S ribosomal protein S18 -
  Sp14A_RS09145 (Sp14A_18920) ssb 1787514..1788002 (-) 489 WP_104968488.1 single-stranded DNA-binding protein Machinery gene
  Sp14A_RS09150 (Sp14A_18930) rpsF 1788014..1788304 (-) 291 WP_104968489.1 30S ribosomal protein S6 -
  Sp14A_RS09160 (Sp14A_18950) - 1789752..1790177 (+) 426 WP_162797784.1 hypothetical protein -
  Sp14A_RS09165 (Sp14A_18960) mutY 1790233..1791381 (+) 1149 WP_115130775.1 A/G-specific adenine glycosylase -
  Sp14A_RS09170 (Sp14A_18970) - 1791413..1792054 (-) 642 WP_115130776.1 HAD family phosphatase -

Sequence

Protein


Download         Length: 162 a.a.        Molecular weight: 17971.63 Da        Isoelectric Point: 4.7187

>NTDB_id=241075 Sp14A_RS09145 WP_104968488.1 1787514..1788002(-) (ssb) [Streptococcus pluranimalium strain 14A0014]
MINNVVLVGRMTRDAELRYTPSNVAVATFSLAVNRNFKSQNGEREADFINCVIWRQPAENLANWAKKGALIGITGRIQTR
NYENQQGQRVYVTEVVADNFQMLESRATREGGSQSSYNGGGYNNQSSNDAFSSSSQTPNFGRDESPFGNSNPMDISDDDL
PF

Nucleotide


Download         Length: 489 bp        

>NTDB_id=241075 Sp14A_RS09145 WP_104968488.1 1787514..1788002(-) (ssb) [Streptococcus pluranimalium strain 14A0014]
ATGATTAATAATGTAGTACTTGTTGGTCGTATGACCAGAGATGCAGAACTTCGTTACACACCGAGCAATGTAGCAGTAGC
TACTTTCTCTCTTGCAGTTAACCGTAACTTCAAGAGTCAAAACGGTGAACGTGAAGCTGATTTCATTAATTGTGTGATTT
GGCGCCAGCCAGCCGAGAATTTGGCTAACTGGGCTAAAAAAGGTGCCTTAATCGGTATCACTGGACGTATTCAGACACGT
AATTATGAAAATCAACAAGGCCAACGTGTTTACGTAACAGAAGTTGTTGCGGATAATTTCCAAATGTTGGAAAGCCGTGC
TACACGTGAAGGTGGTTCACAAAGTTCATACAATGGTGGTGGCTATAATAACCAATCATCAAACGATGCTTTCTCATCTT
CATCACAAACACCAAACTTTGGTCGAGACGAGAGCCCGTTTGGTAACTCAAACCCAATGGATATCTCAGATGACGATCTA
CCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2L0D669

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

60

100

0.63
  ssbA Bacillus subtilis subsp. subtilis str. 168

53.591

100

0.599

Multiple sequence alignment