Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   FORC62_RS02955 Genome accession   NZ_CP022582
Coordinates   595816..596385 (+) Length   189 a.a.
NCBI ID   WP_114914757.1    Uniprot ID   -
Organism   Staphylococcus aureus strain FORC_062     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 590816..601385
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC62_RS02930 (FORC62_0522) cysE 592029..592676 (+) 648 WP_001805237.1 serine O-acetyltransferase -
  FORC62_RS02935 (FORC62_0523) cysS 592660..594060 (+) 1401 WP_000631969.1 cysteine--tRNA ligase -
  FORC62_RS02940 (FORC62_0524) - 594053..594457 (+) 405 WP_000370182.1 Mini-ribonuclease 3 -
  FORC62_RS02945 (FORC62_0525) rlmB 594465..595211 (+) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  FORC62_RS02950 (FORC62_0526) - 595211..595735 (+) 525 WP_000664737.1 NYN domain-containing protein -
  FORC62_RS02955 (FORC62_0527) sigH 595816..596385 (+) 570 WP_114914757.1 sigma-70 family RNA polymerase sigma factor Regulator
  FORC62_RS02960 rpmG 596500..596643 (+) 144 WP_001788193.1 50S ribosomal protein L33 -
  FORC62_RS02965 (FORC62_0528) secE 596699..596881 (+) 183 WP_001074473.1 preprotein translocase subunit SecE -
  FORC62_RS02970 (FORC62_0529) nusG 596894..597442 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  FORC62_RS02975 (FORC62_0530) rplK 597623..598045 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  FORC62_RS02980 (FORC62_0531) rplA 598253..598945 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  FORC62_RS02990 (FORC62_0532) rplJ 599217..599717 (+) 501 WP_001273085.1 50S ribosomal protein L10 -
  FORC62_RS02995 (FORC62_0533) rplL 599760..600128 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  FORC62_RS03000 (FORC62_0534) - 600303..600911 (+) 609 WP_000020304.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23041.89 Da        Isoelectric Point: 9.5259

>NTDB_id=240973 FORC62_RS02955 WP_114914757.1 595816..596385(+) (sigH) [Staphylococcus aureus strain FORC_062]
MKYDLTTQDSTIKRNNSINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRFDVENNYLNKLAIKELICQFKYLSAFEKDVMYLKCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=240973 FORC62_RS02955 WP_114914757.1 595816..596385(+) (sigH) [Staphylococcus aureus strain FORC_062]
TTGAAATATGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATTCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTTTGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTTGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAAAGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAATTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus N315

99.471

100

0.995
  sigH Staphylococcus aureus MW2

97.354

100

0.974

Multiple sequence alignment