Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   I3Y_RS17135 Genome accession   NZ_CP028379
Coordinates   3294365..3295102 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli O145 str. RM9872     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3289365..3300102
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I3Y_RS17120 (I3Y_17470) clpC 3289819..3292392 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  I3Y_RS17125 (I3Y_17475) yfiH 3292522..3293253 (-) 732 WP_000040153.1 purine nucleoside phosphorylase YfiH -
  I3Y_RS17130 (I3Y_17480) rluD 3293250..3294230 (-) 981 WP_000079110.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  I3Y_RS17135 (I3Y_17485) comL 3294365..3295102 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  I3Y_RS17145 (I3Y_17495) raiA 3295373..3295714 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  I3Y_RS17150 (I3Y_17500) pheL 3295818..3295865 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  I3Y_RS17155 (I3Y_17505) pheA 3295964..3297124 (+) 1161 WP_000200122.1 bifunctional chorismate mutase/prephenate dehydratase -
  I3Y_RS17160 (I3Y_17510) tyrA 3297167..3298288 (-) 1122 WP_000225204.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  I3Y_RS17165 (I3Y_17515) aroF 3298299..3299369 (-) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  I3Y_RS17170 (I3Y_17520) yfiL 3299579..3299944 (+) 366 WP_000976004.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=240968 I3Y_RS17135 WP_000197686.1 3294365..3295102(+) (comL) [Escherichia coli O145 str. RM9872]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=240968 I3Y_RS17135 WP_000197686.1 3294365..3295102(+) (comL) [Escherichia coli O145 str. RM9872]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTAGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376

Multiple sequence alignment