Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   OTERR_RS11875 Genome accession   NZ_CP022579
Coordinates   2629795..2631162 (-) Length   455 a.a.
NCBI ID   WP_054621232.1    Uniprot ID   -
Organism   Oryzomicrobium terrae strain TPP412     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2624795..2636162
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OTERR_RS11860 (OTERR_23240) - 2626431..2627615 (+) 1185 WP_054621230.1 pyridoxal phosphate-dependent aminotransferase -
  OTERR_RS11865 (OTERR_23250) - 2627676..2629013 (-) 1338 WP_246154152.1 hypothetical protein -
  OTERR_RS11870 (OTERR_23260) ampD 2629190..2629795 (-) 606 WP_082396930.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  OTERR_RS11875 (OTERR_23270) pilR 2629795..2631162 (-) 1368 WP_054621232.1 sigma-54 dependent transcriptional regulator Regulator
  OTERR_RS11880 (OTERR_23280) - 2631057..2632721 (-) 1665 WP_246154153.1 ATP-binding protein -
  OTERR_RS11885 - 2632803..2633054 (-) 252 WP_082396977.1 PP0621 family protein -
  OTERR_RS11895 (OTERR_23290) ispB 2633342..2634310 (-) 969 WP_054621339.1 octaprenyl diphosphate synthase -
  OTERR_RS11900 (OTERR_23300) rplU 2634506..2634817 (+) 312 WP_054621233.1 50S ribosomal protein L21 -
  OTERR_RS11905 (OTERR_23310) rpmA 2634834..2635094 (+) 261 WP_054621234.1 50S ribosomal protein L27 -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 49827.59 Da        Isoelectric Point: 5.0117

>NTDB_id=240953 OTERR_RS11875 WP_054621232.1 2629795..2631162(-) (pilR) [Oryzomicrobium terrae strain TPP412]
MPPQPPARNERRTCDHVARVLVVDDEPDIRELLDLTLARMGLRCDSAGSVAEARTLLANHDYQLCLTDMRLPDGEGLDIV
RHIGECHSQTPVAVITAFGSTENAVAALKAGAFDYLAKPVALDQLRTLVKSALEVPGEKDTATRIAGLVGDSAVMVQVKE
TIAKLARNLAPVYISGESGTGKERAARLMHGQGPRAGGAFVAVNCGAIPENLMESEFFGYRKGAFTGAESDRDGFFQAAD
SGTLFLDEVADLPLAMQVKLLRAIQEKRVRKVGATQEEAVDVRIISATHKDLRACVDAGTFRQDLYYRLNVIELRLPPLR
ERQEDIPDLVEAVLSRIVAAAGSQRPRVTEAALRALQSYSFPGNVRELENILERAHALCDGDVIDVDDLQLQPQGDSEPV
VGRSEESLDDYLNRVERQAILEALQQTQNNRTAAARVLGITFRSLRYRLERLGIE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=240953 OTERR_RS11875 WP_054621232.1 2629795..2631162(-) (pilR) [Oryzomicrobium terrae strain TPP412]
GTGCCCCCTCAGCCCCCCGCGCGCAACGAACGACGCACCTGCGACCATGTCGCCCGGGTCCTCGTTGTCGACGACGAGCC
CGACATCCGGGAGCTCCTCGATCTGACCCTGGCCCGCATGGGCCTGCGCTGCGACAGTGCCGGTTCTGTGGCCGAGGCCC
GCACCCTGCTGGCCAACCACGATTATCAGTTGTGCCTTACCGACATGCGCCTGCCGGATGGCGAAGGGCTCGATATCGTC
CGGCATATCGGCGAATGCCATAGCCAGACCCCGGTGGCCGTCATTACCGCCTTCGGGAGCACCGAGAATGCCGTGGCGGC
TCTCAAGGCGGGGGCCTTTGATTATCTGGCCAAGCCGGTGGCCCTCGACCAGTTGCGCACCCTGGTCAAGTCCGCCCTGG
AGGTGCCCGGGGAAAAAGATACTGCGACCCGTATTGCCGGGCTGGTTGGTGATTCGGCTGTAATGGTCCAGGTCAAGGAA
ACCATTGCTAAGCTGGCCCGCAATCTGGCGCCGGTGTACATCTCGGGGGAGTCGGGGACGGGTAAGGAACGGGCCGCTCG
TCTCATGCATGGACAAGGGCCGCGTGCGGGAGGTGCGTTCGTGGCGGTGAACTGTGGCGCCATTCCCGAGAATCTGATGG
AGAGCGAGTTCTTCGGCTACCGCAAAGGGGCGTTTACCGGTGCCGAGAGTGATCGGGACGGCTTTTTTCAAGCGGCCGAC
AGCGGAACCCTTTTTCTTGATGAGGTGGCCGACCTGCCGCTGGCAATGCAGGTCAAGCTGCTGCGGGCGATTCAGGAAAA
GCGGGTGCGCAAGGTGGGGGCGACCCAAGAAGAAGCTGTCGATGTGCGCATCATCAGCGCAACGCACAAGGATCTGCGGG
CCTGTGTGGACGCCGGGACATTTCGTCAGGACTTGTACTACCGGCTCAATGTCATCGAATTGCGCTTGCCACCTCTGCGC
GAGCGACAGGAAGACATTCCCGATCTGGTTGAAGCGGTCCTGTCGCGGATCGTGGCCGCCGCCGGATCGCAGCGGCCCCG
CGTCACTGAGGCCGCATTGCGGGCGCTACAGTCCTATTCCTTTCCGGGCAATGTGCGCGAGCTGGAAAATATCTTGGAGC
GCGCCCATGCCCTGTGCGATGGCGATGTCATCGATGTCGATGATTTGCAGCTTCAACCCCAGGGCGACAGCGAGCCGGTC
GTGGGACGCAGCGAGGAGAGCCTCGACGATTATCTCAACCGGGTGGAGCGCCAGGCGATCCTCGAAGCCTTGCAGCAGAC
GCAGAACAACCGTACCGCTGCCGCCCGGGTGCTTGGCATTACCTTCCGCTCACTACGCTATCGCCTCGAGCGCCTGGGAA
TAGAGTGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(148-314)

Response regulator receiver domain (Response_reg)

(20-129)

Bacterial regulatory protein, Fis family (HTH_8)

(413-451)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

61.224

96.923

0.593
  pilR Acinetobacter baumannii strain A118

46.623

100

0.47

Multiple sequence alignment