Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   C6376_RS08210 Genome accession   NZ_CP028369
Coordinates   1841766..1842365 (-) Length   199 a.a.
NCBI ID   WP_107442811.1    Uniprot ID   -
Organism   Streptomyces sp. P3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1836766..1847365
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6376_RS08185 (C6376_08185) - 1837406..1838089 (+) 684 WP_107442806.1 response regulator transcription factor -
  C6376_RS08190 (C6376_08190) - 1838086..1839438 (+) 1353 WP_107442807.1 HAMP domain-containing sensor histidine kinase -
  C6376_RS08195 (C6376_08195) - 1839449..1839946 (-) 498 WP_107442808.1 SgcJ/EcaC family oxidoreductase -
  C6376_RS08200 (C6376_08200) - 1840105..1840941 (+) 837 WP_107442809.1 PhzF family phenazine biosynthesis protein -
  C6376_RS08205 (C6376_08205) - 1841111..1841773 (-) 663 WP_107442810.1 DUF5063 domain-containing protein -
  C6376_RS08210 (C6376_08210) recR 1841766..1842365 (-) 600 WP_107442811.1 recombination mediator RecR Machinery gene
  C6376_RS08215 (C6376_08215) - 1842445..1842789 (-) 345 WP_107442812.1 YbaB/EbfC family nucleoid-associated protein -
  C6376_RS08220 (C6376_08220) - 1843129..1843866 (+) 738 WP_107448844.1 SLATT domain-containing protein -
  C6376_RS08225 (C6376_08225) - 1844000..1845850 (-) 1851 WP_107442813.1 serine/threonine-protein kinase -
  C6376_RS08230 (C6376_08230) - 1845944..1846126 (-) 183 WP_107442814.1 hypothetical protein -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21716.10 Da        Isoelectric Point: 5.1615

>NTDB_id=240840 C6376_RS08210 WP_107442811.1 1841766..1842365(-) (recR) [Streptomyces sp. P3]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHILQAEPTDVRRLAHALLEVKAKVRFCATCGNVAQEELCGICRDPRRDPTC
ICVVEEPKDVVAIERTREFRGKYHVLGGAISPIEGVGPDDLRIRELLGRLADGTVTELILATDPNLEGEATATYLARMIK
PMGLKVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=240840 C6376_RS08210 WP_107442811.1 1841766..1842365(-) (recR) [Streptomyces sp. P3]
TTGTACGAAGGCGTGGTCCAGGACCTCATCGACGAGCTCGGGCGGCTGCCCGGCGTCGGTCCCAAGAGCGCGCAGCGGAT
CGCCTTCCACATCCTGCAGGCGGAGCCGACGGACGTACGGCGCCTCGCGCACGCCCTCCTGGAGGTCAAGGCGAAGGTCC
GCTTCTGCGCGACCTGCGGCAACGTGGCGCAGGAGGAGCTGTGCGGCATCTGCCGCGACCCGCGCCGCGATCCGACCTGC
ATCTGCGTCGTGGAGGAGCCGAAGGACGTCGTCGCGATCGAGCGCACGCGCGAGTTCCGCGGCAAATACCACGTCCTGGG
CGGCGCGATCAGCCCGATCGAGGGGGTCGGCCCCGACGACCTGCGGATAAGGGAACTCCTCGGGCGGCTGGCGGACGGCA
CGGTCACGGAGCTGATCCTGGCCACCGACCCGAACCTGGAGGGCGAGGCCACCGCCACGTACCTCGCCCGCATGATCAAG
CCCATGGGCCTGAAGGTCACCCGCCTGGCCAGCGGCCTCCCGGTGGGTGGCGACCTGGAATACGCGGACGAGGTCACCCT
CGGCCGCGCCTTCGAGGGGAGACGACTCCTAGATGTCTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH)

(2-27)

Toprim domain (Toprim_4)

(80-170)

RecR protein (RecR_ZnF)

(38-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

54.592

98.492

0.538
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

54.639

97.487

0.533
  recR Streptococcus pneumoniae R6

47.938

97.487

0.467